Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq42 154 4e-32 seq158 150 4e-31 seq428 145 2e-29 seq75 141 2e-28 >seq42 Length=107705 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || ||||||||||||||||| || || ||| Sbjct 55167 CAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 55226 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 55227 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 55286 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | ||||| || ||| || Sbjct 55287 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATC 55346 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 55347 CAAAAGGAGTCGACCCTCCA-CTTG 55370 >seq158 Length=48607 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 44542 CAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 44601 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 44602 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 44661 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | ||||| || ||| || Sbjct 44662 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATC 44721 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 44722 CAAAAGGAGTCGACCCTCCA-CTTG 44745 >seq428 Length=13982 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| |||||||| || || || Sbjct 13953 CAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCGGAT 13894 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || ||||| |||||||| Sbjct 13893 ACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAGCAG 13834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || |||||||| || || Sbjct 13833 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAATATC 13774 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 13773 CAGAAGGAGTCGACGCTGCA-CTTG 13750 >seq75 Length=81244 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || |||||||| |||||||| || || ||| Sbjct 7514 CAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCGGAC 7573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| ||||| || || || |||||||| Sbjct 7574 ACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAGCAG 7633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || || ||||| ||| || Sbjct 7634 CGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAACATC 7693 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 7694 CAGAAGGAGTCGACGCTCCA-CTTG 7717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203651279019308