Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq482 140 4e-28 seq71 140 4e-28 seq165 123 3e-23 seq92 120 3e-22 seq107 116 4e-21 >seq482 Length=11891 Score = 140 bits (154), Expect = 4e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| ||||| |||| | ||| | |||||| |||| || |||||| || ||||||| Sbjct 11627 CCTACTGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGT 11686 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 |||| || || || || | || || |||||||| |||||||| || | ||||||||||| Sbjct 11687 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGT 11746 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTC 43127 | | || | || |||||||||| ||| | || | |||| | | | ||| || | Sbjct 11747 CTGGAGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCGATCGTATCCGAC 11805 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 11806 GACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11861 >seq71 Length=77428 Score = 140 bits (154), Expect = 4e-28 Identities = 175/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | ||||| |||||| || | || |||||| || || |||||| Sbjct 69691 TATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAA 69750 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || || | || || |||||||| || ||||| || | |||||||||||| Sbjct 69751 TCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCT 69810 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | || ||||||||| ||| | || || |||| ||| | | | |||||| || Sbjct 69811 GGGGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACG 69868 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| |||||| || |||||||| |||||||| |||||||| ||||| Sbjct 69869 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69923 Score = 136 bits (150), Expect = 5e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 69936 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 69995 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || ||||| Sbjct 69996 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 70055 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | |||||| || || || |||| ||||| Sbjct 70056 GTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 70114 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| |||||||| ||||| Sbjct 70115 TCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70151 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 70164 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 70223 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || ||||| Sbjct 70224 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 70283 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | |||||| || || || |||| ||||| Sbjct 70284 GTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 70342 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| ||||| || || ||||| ||||| Sbjct 70343 TCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCAT 70379 >seq165 Length=45049 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 41168 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 41109 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || |||||||| | ||| | || |||||||| ||| || |||| ||| Sbjct 41108 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 41050 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| |||||||| |||||||| || ||||| | Sbjct 41049 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 40990 Query 43171 CAAAGATTTGCA 43182 |||||||||||| Sbjct 40989 CAAAGATTTGCA 40978 >seq92 Length=66200 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||||| |||| || |||||| || ||||||||||| || Sbjct 66074 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 66015 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || | |||||||||||| | || Sbjct 66014 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 65955 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 65954 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGAC 65896 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 65895 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 65848 >seq107 Length=60113 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || |||| || || | || || |||||||| || || || Sbjct 52705 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 52764 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || |||||||| | ||| | || |||||||| ||| || |||| ||| Sbjct 52765 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 52823 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 52824 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 52883 Query 43171 CAAAGATTTGC 43181 ||||||||||| Sbjct 52884 CAAAGATTTGC 52894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571774763714040