Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq450 275 6e-69 seq107 114 1e-20 seq165 107 2e-18 seq482 95.1 1e-14 seq71 95.1 1e-14 seq92 86.0 6e-12 >seq450 Length=13264 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 3559 GAAGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 3500 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 3499 ATTGGCGCGCACACGAGCGAGTTACGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 3440 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||| | ||| |||||| |||||| ||||| |||| | |||| Sbjct 3439 GACCAGTCCCACAGATTGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAGCTCGCCC 3383 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| | || Sbjct 3382 TGAGAAGCCGGAGATCCAGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATG 3323 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 3322 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 3263 Query 22778 ATTTTCTTGTTCAA-TTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | || ||| | ||||| ||| ||||||| || || Sbjct 3262 ATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 3207 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 3206 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 3147 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 3146 TTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 3087 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| | | | || || Sbjct 3086 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TCCTTGATGAAGCTC 3029 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 3028 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 2970 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | ||| | ||||| | ||| | Sbjct 2969 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCT 2911 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || ||||||||||| | || |||| || |||||||| | || | Sbjct 2910 TGTTCGCG-GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 2852 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 2851 ATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 2792 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 2791 TTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCG 2732 Query 23312 GGACACATGAGACTCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | |||| ||| || | | | || || || ||| |||||||| || || Sbjct 2731 GGGCAGAAGAGAGGCCA-ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 2673 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 2672 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAG 2613 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 2612 GTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGG 2553 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| || Sbjct 2552 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 2493 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 || | ||||| || |||| | ||| || | || || | || || | ||| Sbjct 2492 GACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 2433 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 2432 GTGGATGCTCAAACCGATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGT 2373 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||| ||||| || || || || || ||| ||||| |||||| || || | || Sbjct 2372 GTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTG 2313 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| || ||||| |||||| |||||||| | | || Sbjct 2312 CGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGA 2253 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || |||||||| | ||||| || |||| |||||| Sbjct 2252 CATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGAC 2193 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 ||||| | ||||| ||| || | || ||||| | ||||| || | || || Sbjct 2192 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAGTA 2136 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || |||| | |||||| || ||||| |||| ||| || || || |||| Sbjct 2135 GGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 2083 >seq107 Length=60113 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 52900 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 52841 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 52840 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 52782 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || || ||| | Sbjct 52781 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 52722 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 52721 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 52685 >seq165 Length=45049 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 40978 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 41037 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 41038 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 41096 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || || ||| || ||| Sbjct 41097 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 41156 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 41157 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 41215 >seq482 Length=11891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 11861 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 11802 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 11801 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 11742 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 11741 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 11707 >seq71 Length=77428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 70151 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70092 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 70091 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 70033 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 70032 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 69997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 69923 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69864 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 69863 GACACGATCGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 69805 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || ||||| ||||| ||| | ||| | | || | || | | ||||| Sbjct 69804 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-CGCG-GATTA 69748 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 69747 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 69712 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||| |||||||| |||| || || | || Sbjct 70379 ATGCAGATCTTCGTTAAAACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70320 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 70319 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 70261 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 70260 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 70225 >seq92 Length=66200 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 65848 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 65907 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 65908 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 65967 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 65968 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 66002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733006524560