Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq482 116 3e-21 seq165 113 4e-20 seq92 113 4e-20 seq71 113 4e-20 seq107 109 5e-19 >seq482 Length=11891 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || |||||||| Sbjct 11861 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 11802 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || | || || | ||| ||||| || || ||||| || ||| Sbjct 11801 GATACGATCGA--CAATGTCAAGGCTAAGATTCAG-GACAAGGAGGGCATTCCTCCAGAC 11745 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || ||||| || | || |||| ||||| | | ||||||| Sbjct 11744 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTAC 11685 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || || || || ||||| || || ||||| | || |||| ||| Sbjct 11684 AATATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 11634 >seq165 Length=45049 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| ||||||| ||||| ||||| | || || || ||||||| |||| || |||||| Sbjct 40974 ACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCG 41033 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||||| | ||| || ||| ||||| ||||| || || || ||| Sbjct 41034 TCCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGAC 41093 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || | || |||| ||||| ||| ||| ||| Sbjct 41094 CAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTAC 41153 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || || Sbjct 41154 AACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 41188 >seq92 Length=66200 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 65848 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 65907 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 65908 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 65967 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| ||||| | | |||||||||| Sbjct 65968 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 66027 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || || || Sbjct 66028 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCT 66059 >seq71 Length=77428 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || | ||||| |||| || ||||| || Sbjct 70151 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70092 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 70091 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 70032 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| | | |||||||||| Sbjct 70031 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 69972 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 69971 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 69940 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| |||| || ||||| || Sbjct 70379 ATGCAGATCTTCGTTAAAACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70320 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 70319 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 70260 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| | | |||||||||| Sbjct 70259 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 70200 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 70199 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 70168 >seq107 Length=60113 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| ||||| |||||| | || || || | ||||| |||| || |||||||| || Sbjct 52894 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 52835 Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120 ||| ||||| | ||| || ||| ||||| ||||| || || || ||||| || Sbjct 52834 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 52775 Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180 || | || ||||||||||| || | || |||| ||||| ||| ||| ||||| || Sbjct 52774 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 52715 Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || Sbjct 52714 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 52685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433296349858295