Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq482 132 1e-25 seq71 132 1e-25 seq92 123 6e-23 seq107 109 1e-18 >seq482 Length=11891 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| || || |||||||| || ||| Sbjct 11632 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCG 11691 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || |||||||||| ||||| || ||| Sbjct 11692 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCT 11748 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || || ||||| || || || || || || || || | ||| ||| Sbjct 11749 GGAGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGAC 11808 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 11809 TCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 11861 >seq71 Length=77428 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || |||||||| || |||||| Sbjct 69925 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 69984 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||| ||||| || |||||| Sbjct 69985 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCTGGG 70041 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || | || ||||| || || | || || || Sbjct 70042 GGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCG 70101 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| || ||||| |||||||| || |||||||| Sbjct 70102 ACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70151 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || |||||||| || |||||| Sbjct 70153 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 70212 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||| ||||| || |||||| Sbjct 70213 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCTGGG 70269 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || | || ||||| || || | || || || Sbjct 70270 GGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCG 70329 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| || || || || || ||||| |||||||| Sbjct 70330 ACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCAT 70379 Score = 114 bits (126), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | || | ||| || || ||||| || || || Sbjct 69694 TGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCC 69753 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 |||||||| || || || || | || || || |||||||||| ||||| || ||| Sbjct 69754 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGG---TCT 69810 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || ||||| || || | || ||||| || || | || ||| Sbjct 69811 GGGGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGAC 69870 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| || || || |||||||| || |||||||| Sbjct 69871 TCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69923 >seq92 Length=66200 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || |||||||| || |||||| Sbjct 66074 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 66015 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || ||||||| ||||| || ||||| Sbjct 66014 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGG---TCTGGA 65958 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || ||||| || || | || || || Sbjct 65957 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 65898 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 65897 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 65848 >seq107 Length=60113 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||||| | ||||| || || || | || || || || ||| Sbjct 52706 TCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 52765 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| ||| ||||| || || ||||| || | || ||| Sbjct 52766 ATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACG 52822 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || ||||| ||||||||||| || || ||||||||| Sbjct 52823 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTG 52882 Query 288460 ACGAATATCTGC 288471 || || || ||| Sbjct 52883 ACAAAGATTTGC 52894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179563819868254