Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq71 118 1e-21 seq107 100 3e-16 seq165 93.3 4e-14 >seq71 Length=77428 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || ||| | || ||||| || ||||| |||||||| |||||| Sbjct 70150 ATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCG 70209 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| | |||||||| |||||||| || Sbjct 70210 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGG 70269 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || |||| || | || | ||||| || ||||| Sbjct 70270 GGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTC 70328 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | ||| ||||| || || ||||| || || || |||||| Sbjct 70329 GACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCATC 70380 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || ||| | || ||||| || ||||| |||||||| |||||| Sbjct 69922 ATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCG 69981 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || || || ||| | |||||||| |||||||| || Sbjct 69982 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGG 70041 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || |||| || | || | ||||| || ||||| Sbjct 70042 GGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTC 70100 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| ||||| || || || || ||||| || ||||| Sbjct 70101 GACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70151 Score = 113 bits (124), Expect = 4e-20 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| || || ||||| | || ||| | || ||||| || ||||| ||||| || || Sbjct 69690 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 69749 Query 45167 ATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 ||| || || ||| || | || || || ||| | |||||||| |||||||| Sbjct 69750 ATCCGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 69809 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 || ||||||||||| || || ||||| || |||| || | || | ||||| || | Sbjct 69810 TGGGGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACG 69868 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| || | ||| ||||| || || || || ||||| || ||||| Sbjct 69869 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69923 >seq107 Length=60113 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| ||| || | || Sbjct 52694 TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 52753 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 52754 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 52813 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | ||| ||||| || Sbjct 52814 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 52872 Query 45317 TAGAGTTTTTACAAAAATTTGC 45338 ||||| || ||||| |||||| Sbjct 52873 AAGAGTCTTGACAAAGATTTGC 52894 >seq165 Length=45049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| ||| || | || Sbjct 41179 TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 41120 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| ||||| |||||||| || ||||| || || Sbjct 41119 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 41060 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | || ||||| || Sbjct 41059 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 41001 Query 45317 TAGAGTTTTTACAAAAATTTGCA 45339 || || || ||||| ||||||| Sbjct 41000 GAGGGTCTTGACAAAGATTTGCA 40978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969339310280