Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq165 127 2e-24 seq71 127 2e-24 seq107 125 6e-24 seq92 113 4e-20 seq450 98.7 9e-16 >seq165 Length=45049 Score = 127 bits (140), Expect = 2e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 |||| |||||| | || || || || || || || || || ||||| || || | ||| Sbjct 40978 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 41037 Query 24765 ACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || |||| || || || |||||||||||| ||||| || || || || || Sbjct 41038 ACACGATCGACAACGTCAAGACCAA-GATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 41096 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || ||||| |||||| | | | || | || || ||| Sbjct 41097 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 41156 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || |||| || || Sbjct 41157 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 41203 >seq71 Length=77428 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||||||||| || || || || || |||||||| || || || | Sbjct 70380 GATGCAGATCTTCGTTAAAACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 70321 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || |||| || || |||||||| ||||| ||||| || || || || | Sbjct 70320 GGACACGATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACC 70262 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || |||||||| || || || ||||| |||||| | | | | ||||| | Sbjct 70261 AGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACA 70202 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 | || || ||||| ||||| || ||||||||| |||| Sbjct 70201 ATATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 70165 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || || | Sbjct 70151 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70092 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| ||||| || || || || || Sbjct 70091 GACACGATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 70033 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || ||||| |||||| | | | | ||||| || Sbjct 70032 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 69973 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| ||||| || ||||||||| |||| Sbjct 69972 TATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 69937 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 69923 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69864 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||||| || ||||| ||||| || || || || || Sbjct 69863 GACACGATCGACAACGTCAAGAC-CAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 69805 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || ||||| |||||| | | | | ||||| || Sbjct 69804 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 69745 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || ||||||||| |||| Sbjct 69744 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 69709 >seq107 Length=60113 Score = 125 bits (138), Expect = 6e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 ||| |||||| | || || || || || || || || || ||||| || || | |||| Sbjct 52894 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 52835 Query 24766 CACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 ||| | || |||| || || || |||||||||||| ||||| || || || || || | Sbjct 52834 CACGATCGACAACGTCAAGACCAA-GATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 52776 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 ||||| | ||||||||||| || ||||| |||||| | | | || | || || |||| Sbjct 52775 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 52716 Query 24885 TTCAAAAGGAATCGACACTACACTTGGT 24912 | |||||||| ||||| || |||||||| Sbjct 52715 TCCAAAAGGAGTCGACCCTCCACTTGGT 52688 >seq92 Length=66200 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || ||||| || || || |||||||| || || || | Sbjct 65847 GATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 65906 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 65907 GGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 65966 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| |||||| | | | | ||||| || Sbjct 65967 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 66026 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || |||||||| Sbjct 66027 TATCCAGAAGGAGTCGACGCTGCACTTGGT 66056 >seq450 Length=13264 Score = 98.7 bits (108), Expect = 9e-16 Identities = 792/1255 (63%), Gaps = 84/1255 (7%) Strand=Plus/Minus Query 138789 CGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC 138848 || ||||| ||| | | ||| || || ||| || |||| |||||| || ||||| Sbjct 3296 CGACTCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTC 3237 Query 138849 GGCGCTCTCGTACGGCAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCA 138907 || ||| ||||||| || || | ||||||||||||| || |||||||| || | Sbjct 3236 GGGCGAATCGAACGGCATCGCCAAGGC-CATGAACGCGTCGGCGAGACCTTGCACTCCGA 3178 Query 138908 CTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATA---GGATAATAGT 138964 |||| ||||| ||||| | || || ||||||| || |||| ||||| |||| Sbjct 3177 TGCCGATGGGGCGGTGGCGGAAGTTGGAG--TTTTGCGCCT-CGATGACGGGATAGTAGT 3121 Query 138965 TTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT- 139023 | || |||||||| ||| || || |||| ||||| | || | | | | | Sbjct 3120 TGACGTCGATGATGCGGTTCAAGTTGAAAGCGACGACCTT-GACGACCTCGTGCAACTTC 3062 Query 139024 TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAAT 139082 | ||| ||||| ||| ||| | || || | ||| ||| | | | | Sbjct 3061 TTAAAGTCGTACACGCC------GTCCTTGATGAAGCTCGGCAA---------CGCGA-T 3018 Query 139083 CGAGGCTATGTTGCACACCGC-CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCAC 139141 |||||| | |||||| || || |||| |||| || | ||| |||| || |||| | Sbjct 3017 CGAGGCCAAGTTGCAGACGGCGCACT-CGTCCGGCGCCGAGTACTCGATGATCTCGGTGC 2959 Query 139142 ACAAATTACTAC-ACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 ||| || | || |||||||||| || | ||| | ||| || ||| ||| || Sbjct 2958 ACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCG 2900 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAAC 139260 |||||||| |||||| | || |||||||||| || || | || | ||| | | | Sbjct 2899 TCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGT--ACC 2842 Query 139261 AAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGC-----------TCGTA 139307 || ||||| ||| ||| | | ||| | | |||| ||||| Sbjct 2841 AA------AGCTT----TTG-CGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTA 2793 Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 || ||| | | || ||| || || ||| | || || || | | | | Sbjct 2792 TTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGC 2733 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 || || | ||| | ||| ||||| |||| ||| ||| |||||| ||||| ||||| Sbjct 2732 GGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 2673 Query 139428 CCACAAAGCGAACAGCAAATCGCG--CGCCTTCTTATCTTCCGAACCCATGTTACGTTTC 139485 ||| | || || | | ||| || ||| ||| | ||| || ||| || | Sbjct 2672 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTT--CCTCCTTGCCGTGGTTC--TTGC 2617 Query 139486 --ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 | || ||||| || || ||||| |||||||| || || || ||||| || | || | Sbjct 2616 GAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 2557 Query 139544 CTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | || ||| |||||||| ||||||| || | | || ||| | || || | || Sbjct 2556 CGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCA 2497 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA--CTGTTGCGAGCT 139656 | || | | ||| ||| ||||| |||| |||| ||| | || ||| Sbjct 2496 TGGGGACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCG---- 2441 Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCG 139716 |||| || || | | | ||||| |||||| | ||||| || | |||| || Sbjct 2440 CGGATGTTGTGGATGCTCAAACCGATACCGCCGGCGGTCTTGGAGATGAGCGCGCA--CG 2383 Query 139717 -CGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | ||| || ||||| || ||| || || |||| |||||||||||| || || | Sbjct 2382 TCTTAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGG 2323 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 ||||||| ||||| | ||| ||||| || || || || ||||| || || Sbjct 2322 ACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGT 2263 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | | ||||| | | ||||| | | | ||| | |||| || |||||||| | Sbjct 2262 AGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGC 2203 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 |||| | ||| ||||| ||||| ||||| |||||||| ||| ||| ||||| Sbjct 2202 CGACGGCGACACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAA 2143 Query 139955 tCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 || || | ||| || || || ||| |||||||||| | ||| ||||||| Sbjct 2142 GCAAGTAGGAGCGT--TCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCG 2090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863897046040