Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq71 114 1e-20 >seq71 Length=77428 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || ||||| || || || || ||||| |||||||| | || || Sbjct 69708 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCC 69767 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| || | ||||||| ||||| || || ||||| || || || Sbjct 69768 ATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 69827 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || || ||||| | || | ||||| || || || || || || | Sbjct 69828 GTCCTG-AATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGA 69886 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | || || ||||| |||||||| Sbjct 69887 TCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69923 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || ||||| || || || || || || ||||| || | ||||| Sbjct 70164 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 70223 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || |||||||| | ||||||| ||||| || || ||||| || || || Sbjct 70224 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 70283 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || || || || ||||| | || | ||||| || || || || || || | Sbjct 70284 GTCCTG-GATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 70342 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | |||||||| || |||||||| Sbjct 70343 TCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCAT 70379 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || ||||| || || || || || || ||||| || | ||||| Sbjct 69936 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCC 69995 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || |||||||| | ||||||| ||||| || || ||||| || || || Sbjct 69996 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTT 70055 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || || || || ||||| | || | ||||| || || || || || || | Sbjct 70056 GTCCTG-GATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 70114 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || | || || ||||| |||||||| Sbjct 70115 TCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 70151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385191063710013