Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq107 136 4e-27 seq165 132 5e-26 seq71 122 9e-23 seq450 93.3 4e-14 >seq107 Length=60113 Score = 136 bits (150), Expect = 4e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || | ||| || || || |||||||| |||||||||||| | Sbjct 52670 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 52729 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| ||||| || | ||| ||||| || ||||| Sbjct 52730 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 52789 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| ||| | ||||||||||| || || Sbjct 52790 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 52849 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 ||||| || || || || || || | ||| || || || |||||| Sbjct 52850 TCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 52894 >seq165 Length=45049 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| |||||||||||| | | |||| | || |||||||| Sbjct 41180 GTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTG 41121 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| || | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 41120 CTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 41061 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||||||||| || || ||||| || ||||| || || || Sbjct 41060 GGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 41001 Query 134690 TAAAGTTTTAACGAAAATTTGCA 134712 | || || || || ||||||| Sbjct 41000 GAGGGTCTTGACAAAGATTTGCA 40978 >seq71 Length=77428 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| | ||| ||||| || ||||| || || ||||| ||| | Sbjct 70153 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 70212 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || || ||||| |||||||| || || || Sbjct 70213 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 70272 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| ||| | ||||| || || || || Sbjct 70273 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 70332 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | ||||||||||| || ||||| Sbjct 70333 TCGAGCGTGATCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCAT 70379 >seq450 Length=13264 Score = 93.3 bits (102), Expect = 4e-14 Identities = 331/516 (64%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| ||||||| || ||| || |||| | | ||||| | || | ||||||| Sbjct 2083 ACGACCGCGATTTCGGCTACAACTACTTTGGCTTCAAAACGCTCGAACGCTCCTACTTGC 2142 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 | ||| ||||| | ||| ||||| ||||||||||| |||| || || || | Sbjct 2143 TTCGCATCGACGGCAAGGTCGCCGAACGCCCGCAACACATGCTCATGCGTGTCGCCGTCG 2202 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 |||| ||||| | |||||||| || |||| | ||||| | | ||||| | Sbjct 2203 GCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCGTACAACCTTATGTCCGAGCGCT 2262 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC----GCCTCAATTG 7707 | ||||| ||||| ||||| || | || ||| || ||||| || || | Sbjct 2263 ACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGG----AACGCCTCACCCGCAGCTT 2318 Query 7708 TCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTG 7767 || || ||||| || | || ||| || || || || ||||||||| ||||||| Sbjct 2319 TCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTT 2378 Query 7768 CGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTG 7827 ||||| || ||||| || |||||| || ||| ||| | | || || | Sbjct 2379 AAGACGTGCGCGCTCATCTCCAAGACCGCCGGCGGTATCGGTTTGAGCATCCACAACATC 2438 Query 7828 CGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATG 7887 ||||| | ||| | ||||| ||| ||||| | | | ||| | | |||||| Sbjct 2439 CGCGCGACCGGCTCCTACATCGCCGGCACAAACGGCTACTCGAACGGCATTGTCCCCATG 2498 Query 7888 TTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGC 7944 | || || | ||| ||| | | ||| | || ||||| || || ||||| || Sbjct 2499 CTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGGA 2558 Query 7945 GCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||| || ||||| | |||||||||||||| ||| Sbjct 2559 GCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGAC 2594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360539342360