Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900009975.1_202016-07-08] 5,993 sequences; 26,287,464 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq482 185 1e-41 seq92 167 3e-36 seq71 165 9e-36 seq107 154 2e-32 seq165 150 2e-31 seq192 114 1e-20 seq450 109 6e-19 seq173 89.7 6e-13 >seq482 Length=11891 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 11861 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 11802 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 11801 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 11742 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 11741 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 11682 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | ||||| || || ||||| Sbjct 11681 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGACA 11632 >seq92 Length=66200 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 65848 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 65907 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 65908 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 65967 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| |||||||||| || || || || || || ||| Sbjct 65968 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 66027 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 66028 ATCCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTCCGAGGTGG 66074 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| ||||| || ||||| ||||| Sbjct 66076 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACGATTACGCTCGAGGTCGAGTCCTCG 66135 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||||||||||||| Sbjct 66136 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66195 Query 27526 CAGCG 27530 ||||| Sbjct 66196 CAGCG 66200 >seq71 Length=77428 Score = 165 bits (182), Expect = 9e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 69923 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69864 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||||||||| || ||||| ||||||||| Sbjct 69863 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 69804 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| ||||| || || || || || Sbjct 69803 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 69744 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || || || || | || ||||||| || ||||| ||| Sbjct 69743 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGTCAA 69693 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || || || ||||| ||||| Sbjct 70151 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70092 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || ||||| ||||||||| Sbjct 70091 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 70032 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 70031 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 69972 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 69971 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGG 69925 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || |||||||| |||||||| || || || ||||| ||||| Sbjct 70379 ATGCAGATCTTCGTTAAAACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 70320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || ||||| ||||||||| Sbjct 70319 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 70260 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||||| || || || || || || ||| Sbjct 70259 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 70200 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || ||||||| || ||||| Sbjct 70199 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGG 70153 >seq107 Length=60113 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||||||||||||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 52894 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 52835 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | || | ||| | || || || |||||||| || || || ||||||||||| Sbjct 52834 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 52775 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || | Sbjct 52774 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 52715 Query 27588 CCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| || || || || | ||| | || || || ||||| Sbjct 52714 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTCCGAGGTGG 52670 >seq165 Length=45049 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| || || |||||||| || || || ||||| ||||| | Sbjct 40978 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 41037 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || | || | ||| | || || || |||||||| || || || |||||||||| Sbjct 41038 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 41097 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | ||||| || ||||| || ||||| |||||||||| || ||| | || ||||| || Sbjct 41098 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 41157 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | ||| | || || || ||||| Sbjct 41158 TCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 41203 >seq192 Length=37917 Score = 114 bits (126), Expect = 1e-20 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || || || ||||| || || || || || || Sbjct 12334 GAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCCGAGACGACGCCCTTCTACCCTCGT 12393 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| |||||||| |||||||||||| ||||| Sbjct 12394 TCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTGGATCGTCAAGAACTACCGCGAGGCG 12453 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCT 24923 | || || || || |||||||| || |||||||||| ||||| |||||| || | Sbjct 12454 TACGGCATGTACGCGTGCAACGGTATCTTGTTCAACCACGAGTCCCCGCGTCGTGGTCGC 12513 Query 24924 GAATTTGTTACACGAAAGATTACTCTTGGTATTGACCA---TTGGATCAAGACA--AGGG 24978 ||||| || | |||||| | | | | | | | | | | || | || ||| Sbjct 12514 ACCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGCCGAGATCTCGCTC-GGTCAACAGGA 12572 Query 24979 C-ACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTAC 25037 | ||| | | || || || | || ||||| ||||||||||| || || ||||||||| Sbjct 12573 CTGCCTCT--ACCTCGGCAATATGGAGGCCAAGCGTGATTGGGGACACGCCGCCGACTAC 12630 Query 25038 GTCGACGCCATGTGGCGCATG 25058 ||||| | |||||| | ||| Sbjct 12631 GTCGAGGGTATGTGGAGGATG 12651 >seq450 Length=13264 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 |||||||| |||| ||||||||||||||||| || || ||||||||||||| | |||| Sbjct 4103 GCCCGCGTGCGCAAGTAGTACATGCCCGTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGC 4044 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || ||| || || | |||||| || || || ||||| Sbjct 4043 ATCGACGTGAGCTGCGCCATCGTTGGGCTCGACAAGTGGATGTTAAGCGATTGCGACTGG 3984 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 ||||| || || || || || | || || ||||| | |||||| | | ||||| Sbjct 3983 TCAATGAAGGCACCTCGGTCGGCGGACAAGTCGATAATAGTCTTTTGCGAGAGCTCCCAG 3924 Query 80212 ACTGT 80216 || || Sbjct 3923 ACGGT 3919 >seq173 Length=42099 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| |||||||| ||||| || ||||| ||||| || || || || || || Sbjct 36594 GAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCCGAGACGACCCCCTTCTACCCTCGT 36535 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 || || || ||| | ||| ||| ||| | |||||| |||||||||||| ||| | Sbjct 36534 TCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAAGAACTACCGCGAGTCG 36475 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTC 24907 | | || || || |||||||| || || |||||||| ||||| Sbjct 36474 TACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAGTC 36431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267676622160