Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_001884.1 Length=134416 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 seq1 111 1e-19 seq6 104 2e-17 seq7 102 7e-17 seq4 96.9 3e-15 seq19 91.5 1e-13 >seq2 Length=633208 Score = 131 bits (144), Expect = 1e-25 Identities = 388/588 (66%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 123614 TCAATTGGTCTAGG-GCAGATGAACCTCCATGGATTTCTAGCTCAAAATAATATTGCTTA 123672 ||| |||| || || ||| |||||| | || |||| | |||| ||||||| || ||||| Sbjct 184903 TCAGTTGGACTTGGAGCA-ATGAACTTACACGGATATTTAGCAAAAAATAAAATCGCTTA 184961 Query 123673 TGAAAGTGAAGAAGCTAAGGATTTTGCAAATACATACTTTATGATGGTTAACTTCTACTC 123732 |||||||| |||||| || || || || ||||| |||||||||| | || | |||||| Sbjct 184962 TGAAAGTGCAGAAGCGAAAGAATTCGCTCGTACATTCTTTATGATGTTAAATTACTACTC 185021 Query 123733 ACTGCAGCGTTCTATGGAAATTGCACGAGAAACAGGGGAGACATACTACAAGTTTGATGG 123792 | || ||||||||| || ||||| ||| ||||||| | | || ||| Sbjct 185022 TATTGAGAAAAGTATGGAAATCGCTACAGAAAAAGGCGAGACATTTAAGGACTTCGATAA 185081 Query 123793 TTCGACTTAT--AAATCAGGCGAGTATTTCGAAAAGTACGTAACAAATGATTATAGCCCT 123850 || |||| ||| ||| || ||||||||||| | ||| | ||||| |||| Sbjct 185082 ATCTGATTATGCGAAT--GGCACATACTTCGAAAAGTATGAAACGACAGATTACAGCC-- 185137 Query 123851 CAGTA--TGAAAAGGTTAAAAAGCTATTTGGAGATCAACATATTCCTAATATTCAAGATT 123908 ||||| |||||| ||| | | ||||||| || |||||||| | | |||||| Sbjct 185138 CAGTAACTGAAAAAGTTCAGCAACTATTTGAAGGAATTCATATTCCAACAAAAGAAGATT 185197 Query 123909 GGATGAAGCTT-AAAGAAGATGTAATGAAATATGGTCTTTATCATTCCTATAGACAAGCT 123967 ||| ||| || ||||| | ||| ||| ||||| | || | || ||| | | || Sbjct 185198 GGA-CAAGTTTAAAAGAGCAAGTACAGAAGAATGGTTTATACAACTCATATCGTCTTGCC 185256 Query 123968 ATTGCGCCTACGGGAAGCATCTCATATGTTCAATCATCTACAGCAGGTGTAATGCCAATT 124027 ||||| || || | ||| || |||||| | || || | |||||||| || Sbjct 185257 ATTGCTCCAACACAATCAATCAGTTACGTTCAAAATGCAACTTCAAGCGTAATGCCGATC 185316 Query 124028 ATGGAGAGAATTGAGGAACGTACATACGGAAACAGTAAGACATATTATCCGATGCCAGGT 124087 | ||| || | | ||||| | || | ||||||||||| ||||| | Sbjct 185317 GTAAGTCAAATCGAATCAAGAACATATGCGAATGCGACAACATATTATCCAATGCCGTAT 185376 Query 124088 TTATCGGCTCAGAATTGGTTC---TTCTATAAGGAAGCATACGACATGGATATGTTTAAG 124144 |||| | | || |||| | |||||| | ||||| ||| || |||||| Sbjct 185377 TTAT---CAAAAGATACGTTCTGGTACTATAAATCTTCTTACGATATGAATCAGTTTAAA 185433 Query 124145 GTAGTTGATCTTATTGCAACAATTCAGCAGCACGTCGACCAAGGGATT 124192 || ||||| | || ||| |||||| | || | |||||||| ||| Sbjct 185434 TTAATTGATTTAATCGCAGAAATTCAAGAACATATTGACCAAGGAATT 185481 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 60843 TTTGACTGCGTCTTTAAGTGCTTTTGCTGGCTTAAATGCAGGTGCTTTTGTAGCCGGAAT 60902 ||| || || ||||| | ||||| | || || ||||||||| |||| | || | || Sbjct 322836 TTTAACCGCATCTTTTAACGCTTTACCAGGTTTGAATGCAGGTACTTTACTTGCAGCGAT 322777 Query 60903 ATCAATTTCCTCTCCTGTCTGGGGATTTCTCCCTTTACGAGCTGCGCGTTCACGAACTTC 60962 ||||| ||||| ||||| || || || | ||||||||||| || || ||||||||||| Sbjct 322776 TTCAATCTCCTCACCTGTTTGTGGGTTACGACCTTTACGAGCCGCACGCTCACGAACTTC 322717 Query 60963 AAATGTTCCGAAACCAGGAATACT--TACTTTTTCTCCACTTTTTAATGCCTCTGAAATA 61020 || | ||||| || || || | |||||| || || |||||| || ||| | ||| Sbjct 322716 GAAGTTACCGAATCC--GATTAGTTGTACTTTATCACCTTGTTTTAAAGCTTCTAAGATA 322659 Query 61021 GTGTCAAAGAC 61031 | ||||| || Sbjct 322658 GAATCAAAAAC 322648 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 130014 TTGTTGAGCTAAGCGAACTAAACGTTTAGTGATTTCTCCACCAACTGAACCGTTTGCACG 130073 |||||||||||| ||| | |||||| || | ||| || |||||||||||||| | ||| Sbjct 148848 TTGTTGAGCTAAAGCAACAAGACGTTTTGTTACTTCACCGCCAACTGAACCGTTAGAACG 148907 Query 130074 AGATGTAGTCTCAGCGCCTAATTGAACACCAAACTCAGAAGCTATTTCAAGTTTCATTTG 130133 ||||| || | || ||||| |||||||| || || |||||| ||| | ||| Sbjct 148908 AGATGCTGTATTAGATCCTAAACTTACACCAAATTCTTGTGCAATTTCATATTTAAATTG 148967 Query 130134 TTCAA 130138 ||||| Sbjct 148968 TTCAA 148972 >seq1 Length=1156483 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 130002 ACCGCCCATGTTTTGTTGAGCTAAGCGAACTAAACGTTTAGTGATTTCTCCACCAACTGA 130061 |||||| | | ||| | ||||| ||||| ||||||||||||||| |||||||| || Sbjct 934497 ACCGCCTAATTGTTGCTCAGCTAGTGAAACTAGACGTTTAGTGATTTCACCACCAACAGA 934556 Query 130062 ACCGTTTGCACGAGATGTAGTCTCAGCGCCTAATTGAACACCAAACTCAGAAGCTATTTC 130121 |||||| || |||| ||| | ||||| || | ||||||||||||||| ||| ||||| Sbjct 934557 ACCGTTAGCGCGAGCTGTTGCATCAGCTCCAAGTTGAACACCAAACTCTTGAGCGATTTC 934616 Query 130122 AAGTTTCATTTGTTCAATAGCTGA 130145 ||||||||| || | ||||| Sbjct 934617 GTATTTCATTTGGTCTAATGCTGA 934640 >seq6 Length=382643 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130003 CCGCCCATGTTTTGTTGAGCTAAGCGAACTAAACGTTTAGTGATTTCTCCACCAACTGAA 130062 ||||| | | |||| | ||| | ||||| |||||| ||||||||||||||||||||| Sbjct 282292 CCGCCAAGGCTTTGCTCAGCCATTGCAACTAGACGTTTTGTGATTTCTCCACCAACTGAA 282233 Query 130063 CCGTTTGCACGAGATGTAGTCTCAGCGCCTAATTGAACACCAAACTCAGAAGCTATTTCA 130122 ||||| || |||| |||| || || |||||||| |||||||| || ||| ||||| Sbjct 282232 CCGTTAGCGCGAGCCGTAGAATCTGCTCCTAATTGTACACCAAATTCTTGAGCGATTTCG 282173 Query 130123 AGTTTCATTTGTTCAATAGC 130142 |||||||| || || || Sbjct 282172 TACTTCATTTGATCGATTGC 282153 >seq7 Length=350003 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 130030 ACTAAACGTTTAGTGATTTCTCCACCAACTGAACCGTTTGCACGAGATGTAGTCTCAGCG 130089 ||||||||||| || ||||| |||||||| || ||||||| ||||| ||| || || || Sbjct 84696 ACTAAACGTTTTGTAATTTCACCACCAACAGATCCGTTTGAACGAGCTGTTGTATCTGCA 84637 Query 130090 CCTAATTGAACACCAAACTCAGAAGCTATTTCAAGTTTCATTTGTTCAATAGCT 130143 || | ||| ||||||||||| || |||||| ||||||||| |||| |||| Sbjct 84636 CCAAGTTGTACACCAAACTCTTGTGCAATTTCATATTTCATTTGATCAAGAGCT 84583 >seq4 Length=425142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 60843 TTTGACTGCGTCTTTAAGTGCTTTTGCTGGCTTAAATGCAGGTGCTTTTGTAGCCGGAAT 60902 ||| || || ||||| | | |||| ||| ||||||||||| |||| ||| | || Sbjct 380967 TTTAACAGCTTCTTTTAATTCTTTACCTGCTTTAAATGCAGGAACTTTACCAGCAGCGAT 381026 Query 60903 ATCAATTTCCTCTCCTGTCTGGGGATTTCTCCCTTTACGAGCTGCGCGTTCACGAACTTC 60962 | |||||| || || || || ||||| | ||| ||||||| | | ||| || ||||| Sbjct 381027 TTGAATTTCTTCGCCAGTTTGCGGATTACGTCCTGTACGAGCAGATCTTTCGCGCACTTC 381086 Query 60963 AAATGTTCCGAAACCAGGAATACTT--ACTTTTTCTCCACTTTTTAATGCCTCTGAAATA 61020 ||| ||||| ||||| || || || ||||| |||||| || |||||| | | ||| Sbjct 381087 AAAAGTTCC-AAACC-CGATTAGTTGAACTTTATCTCCAGATTGTAATGCATTAGCAATT 381144 Query 61021 GTGTCAAAGAC 61031 |||||||| || Sbjct 381145 GTGTCAAATAC 381155 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130036 CGTTTAGTGATTTCTCCACCAACTGAACCGTTTGCACGAGATGTAGTCTCAGCGCCTAAT 130095 ||||| || ||||| || || || |||||||||||||| || | ||| |||||||| | | Sbjct 8383 CGTTTTGTAATTTCACCGCCTACAGAACCGTTTGCACGTGAAGAAGTATCAGCGCCAAGT 8324 Query 130096 TGAACACCAAACTCAGAAGCTATTTCAAGTTTCATTTGTTCAATAGCTG 130144 || ||||||||||| || |||||| ||||||||| || | ||||| Sbjct 8323 TGTACACCAAACTCTTGTGCAATTTCATATTTCATTTGATCTAAAGCTG 8275 >seq19 Length=184000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 129987 AAATTAATGA---AATTGACCGCCCATGTTTTGTTGAGCTAAGCGAACTAAACGTTTAGT 130043 |||||||| | ||| |||||| | | ||||| ||| | |||||||| ||||| Sbjct 54273 AAATTAATAAGTGAATCCACCGCCAAGTTGTTGTTCAGCCCTGGCTACTAAACGCTTAGT 54332 Query 130044 GATTTCTCCACCAACTGAACCGTTTGCACGAGATGTAGTCTCAGCGCCTAATTGAACACC 130103 |||||| |||||||| |||||||||||||||||||| || || | || | || || || Sbjct 54333 GATTTCACCACCAACAGAACCGTTTGCACGAGATGTTGTATCTGGCCCAAGCTGTACGCC 54392 Query 130104 AAACTCAGAAGCTATTTCAAGTTTCATTTGTTCAATAGC 130142 || || || || ||| |||||||| ||||| || Sbjct 54393 GAATTCTTGTGCAATCTCATACTTCATTTGATCAATTGC 54431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429977864372165