Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq14 102 6e-17 >seq4 Length=425142 Score = 111 bits (122), Expect = 1e-19 Identities = 180/255 (71%), Gaps = 12/255 (5%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 |||| ||||| ||||||||| ||||| || | || |||| ||||||||| ||| Sbjct 260036 TCAAAATGATTTGTATAAATGTGTGCATCACCAATTGTATGAACAAATTCTCCC---ACT 259980 Query 97111 --AAATCAGTGA-CATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAA 97167 || || | |||| || || | | |||| ||| || || || ||||||||||| Sbjct 259979 TCAAGTCCGCATTCATGTGCAATTAAATGTGTTAGTAGTGAGTAACTTGCAATGTTAAAT 259920 Query 97168 GGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCA 97227 || | || || || ||| | |||||||||||||||||| |||||||||||||| Sbjct 259919 GGAATTCCAAGGAATATGTCACCACTTCTTTGATATAACTGACAAGAAAGCTTTCCATCT 259860 Query 97228 CACACATAAAACTGACTCAATA---CATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||||||| |||| |||||| || || || ||||| |||| |||||| Sbjct 259859 GCTACATAAAACTG---GAATAGCGTATGACAAGGCGGTAAGGCCATACTTGGTACATCT 259803 Query 97285 AAGACATTCCAAGCA 97299 |||||||||| Sbjct 259802 TCTGGATTCCAAGCA 259788 >seq14 Length=201404 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 |||||||||| || | || ||||||||||| || || | || | || | | Sbjct 179928 TTCCAAGCACTCAAAATGATCCTTCTATCGGTGGGATTCTCCTTGATACTCTTGACAACT 179987 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAA--GACCTTGATATTCTG 97408 ||| | || ||||| || |||| || ||||| | ||| | ||| ||| |||| Sbjct 179988 TGCATCAACTGATCGACCCCTTTCCCCTGATAATCATCCTTGGCCGTCCT--ATACTCTG 180045 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCAC 97468 | || ||||||||||| ||||| |||||||| ||||| || || || ||||| |||| || Sbjct 180046 CGCCGAAATGCCTCCACTGGAACCCATAAACCGGTCCCAGATCCCCCTCTTCCCTATGAC 180105 Query 97469 AGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 || |||| |||||| | | | || |||||||| |||||||||| Sbjct 180106 CCAACCCAACCTTATCCAGAAACTGTCTCGATCCATTCCCATCCCAAAT 180154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346760987088650