Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-20 seq3 105 6e-19 seq4 98.7 1e-16 seq1 89.7 5e-14 seq19 87.8 2e-13 >seq6 Length=382643 Score = 109 bits (120), Expect = 5e-20 Identities = 146/199 (73%), Gaps = 12/199 (6%) Strand=Plus/Minus Query 14506 AGGAAATAAATATTATGGCA---AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGAT 14562 ||||||||| |||||||| | ||| |||||||||||||||| || ||||| | Sbjct 14964 AGGAAATAA---TTATGGCAGTAACAGGACAAGTAAAATGGTTTAACAACGAAAAAGGTT 14908 Query 14563 TTGGCTTTATC--ACTTC-AGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCC 14619 | || || ||| | ||| || ||| || || | |||| ||||||||||||||| Sbjct 14907 TCGGTTTCATCGAAGTTCCAGGCGAA---AACGACGTATTCGTACACTTCTCAGCAATCG 14851 Query 14620 AATCTGATGGATTCAAATCACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAG 14679 || |||| || |||||||| | || ||||||||||||||| || || | ||||| | Sbjct 14850 AAACTGACGGTTTCAAATCTTTAGAAGAAGGTCAAAAAGTTAGCTTCGAAATCGAAGACG 14791 Query 14680 GTCAACGTGGTCTTCAAGC 14698 || | ||||| | |||||| Sbjct 14790 GTAACCGTGGACCTCAAGC 14772 >seq3 Length=500241 Score = 105 bits (116), Expect = 6e-19 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 14525 AAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTTCAGAA 14582 ||| || | |||||||||||||||| |||| ||||| || || || ||| | || ||| Sbjct 153660 AAACGGTAAAGTAAAATGGTTTAACTCAGAAAAAGGTTTCGGTTTCATCGAAGTT--GAA 153717 Query 14583 GAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTT 14642 | || |||| | |||| ||| |||||||| |||||| || || |||||| | | Sbjct 153718 GGCGGAGAAGACGTATTCGTTCATTTCTCAGCTATCCAAGGCGAAGGCTTCAAAACTTTA 153777 Query 14643 GATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGC 14698 || ||||||||| ||||| || || || ||| ||||| | ||||| | |||||| Sbjct 153778 GAAGAAGGTCAAGAAGTTACTTTCGAAGTAGAACAAGGTAACCGTGGACCTCAAGC 153833 >seq4 Length=425142 Score = 98.7 bits (108), Expect = 1e-16 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTTCAGAAGAAGGCAAA 14591 |||||||||||||||| || ||||| || || || ||| | || | ||| || || Sbjct 422203 AGTAAAATGGTTTAACAGCGAAAAAGGTTTCGGTTTCATCGAAGTT--GCAGACGGTAAC 422146 Query 14592 GATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGT 14651 || | |||| |||||||||||| ||| || || ||||| || ||||| |||||| Sbjct 422145 GACGTATTCGTTCACTTCTCAGCTATCACTGGCGACGGCTTCAAGTCTCTTGACGAAGGT 422086 Query 14652 CAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGC 14698 ||| ||||| || || |||||||||||| | || || | |||||| Sbjct 422085 CAAGAAGTTAGCTTCGAAGTTGAAGAAGGTAACCGCGGACCTCAAGC 422039 >seq1 Length=1156483 Score = 89.7 bits (98), Expect = 5e-14 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTTCAGAAGAAGGCAAA 14591 ||| |||||||| ||| || ||||| || || || ||| | || |||| || | Sbjct 1137151 AGTTAAATGGTTCAACAGCGAAAAAGGTTTCGGTTTCATCGAAGTT--GAAGGTGGAGAC 1137094 Query 14592 GATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGT 14651 ||| | |||| |||||||||||| |||||| ||| ||||||||| | | || |||||| Sbjct 1137093 GATGTATTCGTTCACTTCTCAGCTATCCAAGGTGACGGATTCAAAACTTTAGAAGAAGGT 1137034 Query 14652 CAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATCACA 14711 ||| ||||| || || | | |||||| | ||||| | ||||| | || | ||| Sbjct 1137033 CAAGAAGTTTCTTTCGAAATCGTTGAAGGTAACCGTGGACCACAAGCTGCTAACGTTACA 1136974 Query 14712 AAAGCATAATTA 14723 ||| |||||| Sbjct 1136973 AAAAACTAATTA 1136962 >seq19 Length=184000 Score = 87.8 bits (96), Expect = 2e-13 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 14520 ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATC--ACTT 14577 |||| ||| || | || ||||||||||| | || ||||| || || || ||| || | Sbjct 127987 ATGGAAAAAGGTAATGTGAAATGGTTTAATGGCGAAAAAGGCTTCGGATTCATCGAACGT 127928 Query 14578 CAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAT 14637 |||| || | ||| | |||| ||| |||||||| || ||| || || | |||| Sbjct 127927 --GAAGGTGGAGACGATGTATTCGTTCATTTCTCAGCGATTCAAGGCGAAGGTTACAAAA 127870 Query 14638 CACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAG 14697 | | || ||||||||| ||| |||||| | || ||||||||||||| ||||||| Sbjct 127869 CTTTAGAAGAAGGTCAAGCAGTGACTTTTGATTTGGAGCAAGGTCAACGTGGACTTCAAG 127810 Query 14698 C 14698 | Sbjct 127809 C 127809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48451349416970