Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_003216.1 Length=40834 Score E Sequences producing significant alignments: (Bits) Value seq9 230 6e-56 seq5 143 7e-30 >seq9 Length=252781 Score = 230 bits (254), Expect = 6e-56 Identities = 241/317 (76%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 37620 CGAATGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATTTACGTTAC 37679 ||| ||||||||||||| | || || || || |||||||| |||||||| ||||||||| Sbjct 22203 CGATTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTAC 22262 Query 37680 ACTCCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAAT 37739 || || || | || || || ||||||||| |||| || ||||| || | ||| Sbjct 22263 ACGCCCAATGGTGTCGCAGTAGCTACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAAT 22322 Query 37740 CAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAA 37799 || | || || || ||||| || || ||||||||||| | ||||| |||| ||||||| Sbjct 22323 CAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATATGGCGTAAACAAGCAGAA 22382 Query 37800 AACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACT 37859 ||||| || |||| ||||| ||||| ||| | || ||||| ||||||||| |||||||| Sbjct 22383 AACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACT 22442 Query 37860 CGTAATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCA 37919 |||||||| |||| | || ||||||||||| | ||| || || || |||| ||| Sbjct 22443 CGTAATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGC 22502 Query 37920 GTTCAATTCTTAGAACC 37936 || ||||| ||||| || Sbjct 22503 GTGCAATTTTTAGAGCC 22519 >seq5 Length=406804 Score = 143 bits (158), Expect = 7e-30 Identities = 275/398 (69%), Gaps = 23/398 (6%) Strand=Plus/Plus Query 20081 TAGAAGTTTAGCGAATGTAAATAAGTTAGCAGACAATACGAAAGCGGCAGCTAGAAAATT 20140 ||||| | || ||| | ||||| ||||| || ||||||||||| |||||| || | Sbjct 271356 TAGAAATGTAAGTAATCTGAATAAATTAGCGGATAATACGAAAGCTGCAGCTTTTAAGTG 271415 Query 20141 GCTAGATTGGT-CTGAAAG--CAACGGGATTGAAGTATTAATCTACGAAACAATTAGAAC 20197 | || || ||| | ||| || |||||||||||||| || |||||||| | || Sbjct 271416 GT---ATCAGTACTGTATCGACAATGGAATTGAAGTATTAATTTATGAAACAATCCGTAC 271472 Query 20198 GAAAGAACAACAAGCCGCAAATGTTAACAGTGGAGCGTCTCAAACAATGCGCTCTTATCA 20257 | || |||||| | | ||||| | ||||| || ||||| |||||||| ||||| Sbjct 271473 GGTCGAGCAACAACGTGAATATGTTCGTAAAGGAGCATCACAAACGATGCGCTCATATCA 271532 Query 20258 CTTGGTAGGACAAGCGCTAGATTTCGT--CA----TGGCGAAAGGTAAAACGGTCGATTG 20311 ||| |||||||| || ||||||| || || | |||| ||| || | ||||| Sbjct 271533 CTTAGTAGGACAGGCATTAGATTTTGTTCCAATTCAGTCGAATGGT---ACAGAAGATTG 271589 Query 20312 GGGTGCTTATCGTTCAGA--CAAAGGCA--AGAAATTTGTGGCAAAGGCAAAATCTTTAG 20367 | || ||| | ||| | |||| || |||| || | || ||| | | Sbjct 271590 GAATGGCTATAATAAAGAACCGTGGGCATCAGCAATTCGT----TATGCTAAACAAATTG 271645 Query 20368 GTTTTGAGTGGGGTGGTGATTGGTCTGGATTTGTAGACAATCCGCACCTTCAATTTAATT 20427 | ||||| ||||| ||||| ||| |||||||| || | ||||| | |||| ||| | Sbjct 271646 GCTTTGAATGGGGCGGTGACTGGAAAGGATTTGTGGATAGCCCGCATTTGCAATATAACT 271705 Query 20428 ATAAAGGCTATGGGACTGATACTTTTGGAAAAGGAGCT 20465 | ||||| ||||| || ||||||||||||||||| ||| Sbjct 271706 ACAAAGGATATGGAACGGATACTTTTGGAAAAGGTGCT 271743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130538758899640