Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_004166.2 Length=44010 Score E Sequences producing significant alignments: (Bits) Value seq42 809 0.0 seq9 109 2e-19 >seq42 Length=115759 Score = 809 bits (896), Expect = 0.0 Identities = 1563/2289 (68%), Gaps = 28/2289 (1%) Strand=Plus/Minus Query 25413 ATATCGGATCATTCCTCATGCTGATGTGACGAATAACAATAAGCGGCTTTGGAAAGCGAT 25472 ||||||||| ||||||||||| ||||| | ||||| | ||||| | ||| ||||| Sbjct 41479 ATATCGGATTATTCCTCATGCGGATGTATCTAATAATACAAAGCGTTTATGGCGGGCGAT 41420 Query 25473 TCATAAAATGTATGAGCTGTACGA---TTCGCCATTCAGCCGCATAGAAAAGAGCGGTAT 25529 ||||| |||||||| ||||||| | | | || || ||||||| | || || Sbjct 41419 CCATAAGATGTATGAAATGTACGAAAGTATGGGA---AGTCGTATAGAAAGAAAAGGAAT 41363 Query 25530 GAAATTCACGTACCGGGAGAAAGATTATTTTTGGTACGATATCATTTTCAGAATGAAAAA 25589 | ||| || || || || || ||||| |||| ||| | |||||| | | |||| Sbjct 41362 TACATTTCATTATCGTGAAAAGGACTATTTCTGGTTTGATGTTGTTTTCAAACAGGAAAA 41303 Query 25590 CGGCCGTAAAAGTGTTGAGTTTTATGTATCCACAACCCGTTATCAGGCCGATAAACTCAA 25649 |||| || | |||| ||||||||| | || | | ||||| || || ||||| Sbjct 41302 GGGCCAGAAGAAAATTGAATTTTATGTAGCAACTAGCGAATATCAAGCATTAAAGCTCAA 41243 Query 25650 AAAGAAAATCGAAAATAAAGTACACGCCACTATAACAGAAGCAAGCGTGAA----AGAGT 25705 || ||| | || || ||| | | || || | || ||||| || ||| | Sbjct 41242 AAGAAAACTAGAGAACAAAATGAGTGTGACAATTA----AGGAAGCGGAAATATCAGATT 41187 Query 25706 TGGCCGTCCCTTTGGAGAATACAATTTTGCAGGAAATGAGATACCTGAAACACGATATTT 25765 || | || || |||||||| | || |||||| |||| ||||||| ||||| | Sbjct 41186 TGCAAATTTCTAATGAAAATACAATCGTACAAGAAATGCGATATTTGAAACATGATATCT 41127 Query 25766 TCACGCTGAACACAAATTCCAATGACGTGAAAACACCTATTTCCAACTTGCTGAATGTGG 25825 | | | || |||||| ||| || ||||| |||||| || | | | ||| Sbjct 41126 TTTCCTTAAATACAAATAGCAACGATACAAAAACGCCTATTGGTAATATTTTAAGTGTTA 41067 Query 25826 TCGATGAATTACAAGACGATGGAGACTTTGCACGGTTCAGTGTGTGTAATGAATCAGAAT 25885 | |||||| || | ||||||||| || || || ||| | ||||||||| | ||| Sbjct 41066 TTGATGAACTAAGTTATGATGGAGACATTTGTCGATTGAGTATCTGTAATGAAGCGGAAA 41007 Query 25886 CACGTCAAAAATGGGTGAAGAACGCTCATTGGGCGTATGAGAAGGTGAAACGTGGTAAGG 25945 ||||| ||||||||||| |||||| ||||| ||| ||| | || || || Sbjct 41006 ACCGTCAGAAATGGGTGAAAAACGCTTCCTGGGCCATTGAAAAGTTAAAGAAGGGGAAAC 40947 Query 25946 TTCCGCAACGTCCGGCGCTAA-CAGCTAAGAAGCTCACAACGGGTGGGAAGAACGTTATT 26004 || ||||| | | | || || | || ||| || | || | | | || Sbjct 40946 CACCCCAACGGGTTAATATGAGCGGCAAACGA-CTTGTAACAGGGGCTAAAATTGGTGTT 40888 Query 26005 GCAGGATGC-ATAAATGAAGTGAACAGCCTCTTATCTGACGCCTTACAAGCCTTGTCAAA 26063 || || || || |||||| | || | ||| |||| | || || || || || || Sbjct 40887 GC-GGCTGTTATTAATGAAATAAATGATTTATTAACTGATACATTCCAGGCGTTCTCGAA 40829 Query 26064 CTCATTTTTCAAAACGGAAAAGACTATGAAGAAAGAAAAAGTGATCAAGAAAGGC-CATG 26122 | | ||||| ||| | || || | | | ||||| | | || || |||||| ||| Sbjct 40828 CGCTTTTTTTAAATCAGATAAAAAATTTAGCAAAGAGCACATCATTAA-AAAGGCACATA 40770 Query 26123 CGATACAAGATGAAATAGGCGCAACCCGGTTTTCTCATGAGAAAGGAAACCTTCCAGTGT 26182 | || |||||| | || ||| || | | |||| |||||||| | || || | Sbjct 40769 CAATCGCTGATGAAGTTGGAACAAATCGAGTGAGTTATGACAAAGGAAATCAGCCTGTTT 40710 Query 26183 TCAAAAGCAGAATAAGGGTGGCGGCTCATTCGAAAAACAGATTGACTCGTGACACTATGG 26242 | |||| | ||| ||||||| | ||||| | | | || || | || || |||| Sbjct 40709 TTAAAACGCGTATACGGGTGGCCTCACATTCCCATGATCGGTTAACCAGGGAGACAATGG 40650 Query 26243 CAGAATCATTGGCGTTGAGCTTGACGGACTTATCAGAATCAAATGAGTTACAGGGCGTTA 26302 ||| | || || | ||| ||| ||||||||| | ||||| |||| ||||| | Sbjct 40649 GGGAAACCTTAGCACTTTCTATGATGGATTTATCAGAAACGAATGAACTACATGGCGTAA 40590 Query 26303 AAGTACGATTCAAGAAGCGCCGGGAAGAGATATTGAACGAAATGAACACACTTTCCGTTA 26362 || || || | | || |||| ||| ||||| | ||| | || ||| || || Sbjct 40589 AAATAAGAATGAGAAAACGCCAAACAGAAATATTACAGGAATTAAATACA-TTCGAACTA 40531 Query 26363 GCGCCCG-GACAAAAACGGACGGAAACGTTAACTTAATCAGCACCGACGAAATGAACAAA 26421 | | |||||| || || || || || || || ||||| ||||||| |||| Sbjct 40530 TCAAGCAAGACAAAGTTTGATCCGAATGTAAATTTGATGAGTACCGATGAAATGAGCAAA 40471 Query 26422 CTCGCTATGATGATGCCGCCGAAAGATTTACAACGTAAATATGCTGATACATTAAGCGTC 26481 | ||| || ||||| ||||| || ||||| |||||||| ||| |||| || || Sbjct 40470 TTAGCTTTGCAAATGCCTGTAAAAGAGTTGCAACGAAAATATGCAGATGCATTGAGTGTA 40411 Query 26482 AAAAAACAAGTCGAGGTAGAAATCCCTGCCGTCATGAGGGATGAAAGCGGCATATATCTT 26541 ||||| |||| || | || || || || | ||| ||||||| | || |||| | | Sbjct 40410 AAAAAGAAAGTTGAAATTGAGATACCAGCGATTATGCGGGATGAGAAAGGAATATTTTTA 40351 Query 26542 GGAGAATCCGAAATCAAAGGAGAAAAAATACCAGTATACATGCCCGTTACCAACCCTGAC 26601 ||| | || ||| | |||| ||||||||||| | || ||||| | || || || Sbjct 40350 GGACATTCGGAATTGAAAGATCAAAAAATACCAATCTATATGCCAATAGATAATCCAGAT 40291 Query 26602 AACTTCTATAGGGGGTACACATTCATAGGAGGGCAAGGAGCCGGGAAGGACACAGCGATA 26661 || || ||||| || ||| || |||||||| || || || || || || ||||| || Sbjct 40290 AATTTTTATAGAGGTTACGTCTTTATAGGAGGACAGGGGGCTGGTAAAGATACAGCAATT 40231 Query 26662 AAAAATTGGGTTGTCGATTGTAATTTAAAACATAATATCAGTTTTATCATCCCGGACGCT 26721 || |||| ||| | || | ||| ||||||||| || ||||||||||| || || || Sbjct 40230 AAGAATTTTGTTATTGAGGGAAATACAAAACATAAGATTAGTTTTATCATACCAGATGCA 40171 Query 26722 ATCGTTGAGGAAGGCGGGCGCGGCATGGCCGATGGAATTCGCGACGCTCTGCCGCCAGAA 26781 || || || ||||| ||||| || ||||| || || ||||| || || | || |||||| Sbjct 40170 ATTGTAGAAGAAGGTGGGCGGGGGATGGCAGACGGGATTCGTGATGCATTACCACCAGAA 40111 Query 26782 AGAATCATTGATCTGAACATGAATGATGATGATTTTATCCCGCCTCTTGATTTGACGGAG 26841 | || ||||||||| | | || || ||||| |||||| ||||| ||||| || || Sbjct 40110 AACATTATTGATCTGGATTTAAACGACAGTGATTATATCCCACCTCTAGATTTAACAGAA 40051 Query 26842 GTAATTAGCAAACTTGGCCGAAATGGAGCCAGCCGTTTTGCTGACGAAATGATTGACTTC 26901 ||||||| || || || || || || || | ||||| || ||||||||||| ||| Sbjct 40050 GTAATTACAAAGCTAGGGCGGAACGGTGCTTCAAGATTTGCGGATGAAATGATTGATTTC 39991 Query 26902 ATACAGCTTGATGGCCTTTCCCGGTCAGAAAAATATTTGACCGATGCGGCGAAAGC--GT 26959 || || |||| || | ||| ||||||||||| || |||||||| ||||| || Sbjct 39990 ATGCAAATTGAAGGATTAAGCCGAAGTGAAAAATATTTAACGGATGCGGCCAAAGCAAGT 39931 Query 26960 CAAGGGGTAGCTTGTTCAATATTAAACGGATCATCGAGGATGAAGATTACAGGGCGGACA 27019 |||| || | || ||||||||||| || || || |||||||| | ||| | Sbjct 39930 AAAGGA--AGTCTATTTAATATTAAACGTATTATAGAAGATGAAGACTTTCGGGTAAATC 39873 Query 27020 GAATAGAAGAACTTTTGAACGAAGGTAATAACCGCCTTGCTAACGAGTTATTGCAGTGGG 27079 | || ||||| | |||| ||||| ||| || ||||| || ||| | | ||||||| Sbjct 39872 GCATTCAAGAATTAGTGAATGAAGGGAATTTGCGTCTTGCGAATGAGCTGATACAGTGGG 39813 Query 27080 GGGATAATGAGCAATTAGGTAGTAAATGTGACCCGATTTTGCACCGTTTAAACCGTTTCT 27139 | |||||||| |||||||| | ||| ||||| || || | | | |||||||| || | Sbjct 39812 GAGATAATGAACAATTAGGGAATAAGTGTGATCCCATCATAACCAGATTAAACCGCTTTT 39753 Query 27140 TTGGCAACGAACGCCTATATGACATATTCGCGCAAGACCCTCTTAAAGAGCTGGACTTCG 27199 |||| || ||| | | ||||| || || || |||||||| | ||||| || || || | Sbjct 39752 TTGGGAATGAAAGATTGTATGATATCTTTGCACAAGACCCATTGAAAGAACTTGATTTTG 39693 Query 27200 CTAAGTGGATGCAAGAGGGTAAGGTAATTATTATCCGGGTTCCGAACGGAAGAGGTCTTG 27259 ||| ||||||||||| || ||||| |||||| | ||||||| || | || || | | Sbjct 39692 GTAAATGGATGCAAGAAGGAAAGGTTATTATTTTAAGGGTTCCAAATGCTAGGGGATTGG 39633 Query 27260 GGGAATTGGCCGTAAAAACTCTTGTCCACTGGATAACACTGAAAACATTTATGACCCGAT 27319 ||||| || |||||||| || || |||||||| ||||| ||||| || |||||| | | Sbjct 39632 GGGAACATGCAGTAAAAACCCTGGTTCACTGGATCACACTAAAAACCTTCATGACCAGGT 39573 Query 27320 TGCTCATGACGAAGGAAGAACA-GAAAAACGGTTGTTTCATCGTTTTTAACGAGCCGGAA 27378 | | ||||| || |||| || ||||| || |||| ||| ||||||| || || || Sbjct 39572 TATTAATGACTAAAAAAGAGCAAGAAAATGGGGCGTTT-ATCATTTTTAATGAACCCGAG 39514 Query 27379 CAATACGAAAGTGAAGGATTGACAAAATTAATGGGGCGCATTGGTACAGAAGGGCGCAAG 27438 ||||| |||||||||||||| || ||||| ||||| | | |||||||| || | || Sbjct 39513 CAATATGAAAGTGAAGGATTAACTAAATTGATGGGTAGAGTGGGTACAGAGGGCAGAAAA 39454 Query 27439 GAACGTTTGGGAAGTATTTATGCCTTCCATCACTGGAATAAGCTACAGCCGAGCCTACAG 27498 || | | ||||| || ||||| || || || ||||| || | | ||| |||| Sbjct 39453 GAGAGACTAGGAAGCATCTATGCATTTCACCATTGGAACAAATTGAAACCGTCATTACAA 39394 Query 27499 GAGAATCTACAGGGCGGTGGGGTACAACAATTCCTCTTCATGAATGACCATACAAAAACT 27558 |||||| |||| || || || |||| ||||| || || ||||| || |||||||| || Sbjct 39393 GAGAATTTACAAGGTGGCGGCATACAGCAATTTCTATTTATGAACGATCATACAAAGACA 39334 Query 27559 TTCGAAATGTCAAAGCATAGGTTTGAGGATACTGTACCACTTGAAGAAGCTTACAAAATT 27618 || ||| | || ||| || | ||||||||||| | |||| ||| |||| || ||||| Sbjct 39333 TTTGAATTATCTAAGTATCGATTTGAGGATACAATTTCACTAGAACAAGCATATAAAATA 39274 Query 27619 CCAGCACATCACGCCATAATAAGCGTTAGAGCCGCCGGAGAAATGCAACCAGCGTTCATA 27678 |||||||||||||| || || || || ||||| | ||||||||||||||| ||||||| Sbjct 39273 CCAGCACATCACGCGATTATCAGTGTAAGAGCTGGGGGAGAAATGCAACCATCGTTCATT 39214 Query 27679 TGCAAGATG 27687 || || ||| Sbjct 39213 TGTAAAATG 39205 >seq9 Length=252781 Score = 109 bits (120), Expect = 2e-19 Identities = 209/307 (68%), Gaps = 1/307 (0%) Strand=Plus/Plus Query 37739 CTTAAAAAG-ATGGCCCGTGAGCTTGATGTGGTAGTGATAGCACTTTCTCAGTTATCCCG 37797 ||||||| | || || ||||| | | ||| || || || | || |||||||| || Sbjct 27569 CTTAAAAGGGATTGCGCGTGAATTGCAAGTGCCTGTTATTGCTTTATCACAGTTATCTCG 27628 Query 37798 TCAAGTGGAACAGCGTCAGGACAAACGACCAATGCTATCGGACTTGCGGGAAAGTGGACA 37857 | || ||| ||||| || ||||| || ||| | || || | || ||| |||| Sbjct 27629 TGGTGTAGAATCCCGTCAAGATAAACGCCCGATGATGTCTGATATTCGTGAATCTGGAAG 27688 Query 37858 GCTAGAGCAAGATGCAGACATCATCGAGTTTCTTTACAGGGATGACTATTATGATAAAGA 37917 | ||||| ||||| || || | | || || || | || ||||| |||||| ||| Sbjct 27689 TATTGAGCAGGATGCTGATATTGTAGCTTTCCTATATCGTGAAGACTACTATGATCGAGA 27748 Query 37918 GAGTGAAAGTAAAAACATTGTTGAGGTTATCATCGCGAAACACCGGGACGGCCCGGTAGG 37977 | |||| ||||| | |||| |||| || || ||||| || |||| || ||||| Sbjct 27749 AACGGAAAACAAAAATACAATTGAAATTATTATTGCAAAACAACGTAACGGTCCAGTAGG 27808 Query 37978 AACTGTGTCACTGGCATTTATTAAAGAGTACGGCAATTTTGTAAATTTAGAACGTCGTTT 38037 | ||| ||| ||||| | ||||||| | || || || || |||||||||||||| Sbjct 27809 TTCAGTGGAACTTGCATTCGTCAAAGAGTTCAATAAGTTCGTTAACTTAGAACGTCGTTT 27868 Query 38038 TGATGAT 38044 ||| ||| Sbjct 27869 TGAGGAT 27875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140701301753480