Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq9 621 1e-173 >seq9 Length=252781 Score = 621 bits (688), Expect = 1e-173 Identities = 734/989 (74%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 25879 ATTATTAATCTCTATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTAC 25938 |||| || || | ||||| |||||||| |||||| | || | ||||||||||||||||| Sbjct 42855 ATTAATATACTTTGTCACCATTGAAAATCGAGTTTTTCACGACAACATAATCTACAGTAC 42914 Query 25939 GTAATGATTTCAAGTCTTTTCCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGCA 25998 | | | | || | | |||| || || || || || || ||| | |||||||| || Sbjct 42915 GAATAGCGTCTAATTTTGTTCCGCCAGCGTAAGAGATAGAAGATTGAAGATCTTGTTCCA 42974 Query 25999 TTTCTTTTAAGGTATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCTA 26058 |||| |||| ||||| ||| || || ||||| || || |||||||| |||||||| | Sbjct 42975 TTTCGATTAACGTATCTTCTAAAGAACCTTTATGCTCAACGAACATTTTCTTACCTTCAA 43034 Query 26059 CATTTTTATGTTCGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGTT 26118 | ||||| | || || ||||| |||||||| ||| ||| || ||||||||||| ||| Sbjct 43035 CGTTTTTCTTCTCACCCTTTTGGAATTCAGAAGCAGAACCGAAGTATTCTTTATAAAGTT 43094 Query 26119 TACCATCAAGTTCTACAGTTTCACCAGGTGATTCTTCGTGTGCCGCAAATAATGAACCAA 26178 | ||||| ||| | ||||| || || || |||||||| | || |||| ||||| | Sbjct 43095 TGCCATCTCTTTCAATTGTTTCCCCTGGAGACTCTTCGTGACCAGCGAATAGAGAACCGA 43154 Query 26179 TCATGACCATTGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGC 26238 |||||||||| | ||| ||||||| ||| || ||||| | |||||| || || | || | Sbjct 43155 TCATGACCATAGTTGCCCCAAATCGAATAGATTTAGCTACGTCGCCGTGTGTACGAATAC 43214 Query 26239 CACCATCGGCAATCAAAGGTTTACGAGCTGCTTTACTACATATGTTTAATGCCGCTAACT 26298 ||||||| || || | || |||| || ||||| ||| | | ||| |||| || Sbjct 43215 CACCATCAGCGATAATTGGCTTACTTGCAGCTTTTGCACACCAGCGAAGTGCAGCTAGCT 43274 Query 26299 GCCAACCACCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTA 26358 ||||||||||||| || || ||||||||||| || |||||||||||| ||||||| || | Sbjct 43275 GCCAACCACCAGTTCCGAAGCCTGTTTTAATTTTAGTAATACAAACTTTACCAGGTCCAA 43334 Query 26359 TACCGACTTTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACCTTCTGGCGTAC 26418 |||| ||||| || ||||| ||||||||||||||||||||||| || ||||||| || | Sbjct 43335 TACCAACTTTTGTTGCATCGGCACCAGCATTTTCTAATTCTCTTACCGCTTCTGGAGTTC 43394 Query 26419 CAACATTACCAGCAATAACAAAACTATCAGGTATATGGGTTTTAATATGTTTAATCATGT 26478 |||| || ||||| ||||| || || || |||| ||| |||||||||||| |||||||| Sbjct 43395 CAACGTTTCCAGCGATAACGAAGCTCTCTGGTAAATGTTTTTTAATATGTTGAATCATGT 43454 Query 26479 TTATCACTGAATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGGGATTAATT 26538 | ||||| | || || ||||| || || ||||| || || |||||||| || | | || Sbjct 43455 TGATCACAGCATTAGAATGACCGTGTGCGATATCAATCGTGATATATTCAGGTGTAAGTT 43514 Query 26539 TTTCTTGAGCTAACTTTTCAATAAAATCAAATTCCGCTTTCTTTACACCAACTGAAATAG 26598 || |||||| | || | || ||| |||| | | ||||||||||| |||| Sbjct 43515 GCTCAGCAGCTAATTGTTGTACGAATTCATATTCGTCCTCTTTTACACCAACGCTGATAG 43574 Query 26599 ATGCAAATAAGCC---TGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTTCTTCAT 26655 | || | ||| || ||| |||||||| | | || || | |||| | ||| | Sbjct 43575 AAGCGATTAATCCACGTGA---TTGCATATCTCTAATGAATGAGATTCGTTTCTCTGGTT 43631 Query 26656 CAAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATTTCTCAT 26715 ||||||||||||||||||||||| | || ||||| || | | || | | | |||| Sbjct 43632 GGAAACGATGCATGATATAAAAGTAGTTGTTCTCAGCTAAATAAGTTGCAATTCTTTCAT 43691 Query 26716 TCATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTGAATT----TTTTCGGACCA 26771 |||| ||||||||||||||||| || ||||||| || |||| ||||| | | Sbjct 43692 CAATAATCGTTTGCATATTTGCAGGCACGACAGGTAATTTAAATTTATGTTTTC---CTA 43748 Query 26772 AATTGGATAGTTGTATCACATTCTGATCTACTCTCAACTATACATTTATTAGGTATTAAT 26831 || | || ||||||||||||||| || | || | || |||||||| ||| |||||| Sbjct 43749 AAGT-GACAGTTGTATCACATTCAGAGCGGCTATTTACAATACATTTTGCAGGAATTAAT 43807 Query 26832 TGAATATCTTCATAGTCAAATA--TTTTC 26858 |||||||||||||||||||||| ||||| Sbjct 43808 TGAATATCTTCATAGTCAAATACGTTTTC 43836 Score = 116 bits (128), Expect = 1e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 34945 CGCCAAATGGTGTGAGTGTTACCACTTTCACTATCGCAGTTAACAGAACATTTACTAACG 35004 |||| |||||||| || | ||||| || | || || || | ||||| | || Sbjct 22264 CGCCCAATGGTGTCGCAGTAGCTACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATC 22323 Query 35005 CTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTTTTAGAAAACAAGCAGAAA 35064 ||||| || ||||| || ||||||||||| ||||||| | | ||||||||||||| Sbjct 22324 AGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATATGGCGTAAACAAGCAGAAA 22383 Query 35065 ATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCAC 35124 | ||| |||||||| ||||| || || ||||| ||||||||| | ||| | | Sbjct 22384 ACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTC 22443 Query 35125 GCAGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTG 35184 | | ||| || |||| || ||||||| | || |||||||| | ||||| || | Sbjct 22444 GTAATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCG 22503 Query 35185 TTCAATTCTTAGAACCG 35201 | ||||| ||||| ||| Sbjct 22504 TGCAATTTTTAGAGCCG 22520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146624118763070