Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_007458.1 Length=37253 Score E Sequences producing significant alignments: (Bits) Value seq3 273 5e-69 seq4 203 8e-48 seq361 178 3e-40 seq19 174 4e-39 seq1 109 1e-19 >seq3 Length=500241 Score = 273 bits (302), Expect = 5e-69 Identities = 357/489 (73%), Gaps = 4/489 (1%) Strand=Plus/Plus Query 17635 AAAAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATG 17694 |||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||| Sbjct 206 AAAAAAGGAGATAATCAGTAATGGAAATTAGAAAAAAATTAGTGGATCCAAGTAAATATG 265 Query 17695 GTACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATG 17754 ||| ||||||||| ||||||||| || ||| ||||| || || || || || |||| Sbjct 266 GTATAAAGTGTCCCAATACAATGACACCAGAATTCATCACAGTACATAATACGTACAATG 325 Query 17755 ATGCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTC 17814 |||| |||| |||||||| | || |||||| | || |||||| |||||||||| Sbjct 326 ATGCATCAGCAGAAAATGAGATATCGTATATGATTGGGAATAATAATTCAGTGTCGTTTC 385 Query 17815 ATATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGG 17874 || |||||||||||||||| |||| | |||||||||| ||| || |||||||| | || Sbjct 386 ATGTTGCAGTAGATGACAAAGAAGCAGTACAAGGTATTCTGTTTGATCGTAATGC-TTGG 444 Query 17875 CTTGC-GGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTAT 17933 | ||| || || || || || || |||||| |||| || || ||||| || ||| Sbjct 445 CATGCAGGTGATGGTAACGGAAATGGTAATCGTAAATCTATCGGAGTGGAAATTTGCTAT 504 Query 17934 TCAAAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGA 17993 || | || || |||||||| || || || ||||||||||| | |||| | Sbjct 505 TCTCTAAGCGGTGGGGATAGATATTACAAGGCGGAGGATAATGCAGCAATTGTTATTGCT 564 Query 17994 CAACTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCA 18053 || | ||| | |||||| |||||| ||||| || || ||| |||| ||| Sbjct 565 CAGTTAATGAAACAATTCAATATACCGATTAGTAATGTACGTACACATAAATCGTGGAGT 624 Query 18054 GGTAAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGGGGAGC-ATTCATTCAGAA 18112 || || |||| || ||| ||||| | | ||| |||| | | ||| | ||||||| |||| Sbjct 625 GGAAAGCATTGCCCACATCGAATGCTCGATGAAGGAA-GAGTGGATCAATTCATTGAGAA 683 Query 18113 GGTTAAGAA 18121 | | || || Sbjct 684 GATAAACAA 692 >seq4 Length=425142 Score = 203 bits (224), Expect = 8e-48 Identities = 294/409 (72%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 32011 TAAAAAGTCATATGTTTTTTATCTTCTTTATAGTACTCTAACCGGTTTTGCAAAGTGCCA 32070 ||||| |||||||| ||| || ||| |||| || | ||| |||| ||||| || || Sbjct 47835 TAAAATGTCATATGAGGTTTCTCATCTCTATAATAATTTAAACGGTCTTGCAGTGTCCCT 47776 Query 32071 GTGTGGAACTCAAACTTATGGCCATCTGGATCTGTAAAGTAAAGAGATCTTTGGTCTCTC 32130 | ||| |||||||| ||||| || || ||||| |||||| | |||| ||||| Sbjct 47775 GAGTGAAACTCAAATTTATGACCGTCAGGATCAACAAAGTATATAGATTCGCAATCTCTT 47716 Query 32131 TCATCTCTTTCTCGGCCAGGTAAAATATTAACATCATTTTGAATTAATACTTCTTTTAAA 32190 |||| | ||||| || ||||||||| ||||||||||| |||| | | ||| | Sbjct 47715 ACATCACGTTCTCTTCCTTGTAAAATATGAACATCATTTTCTTCTAATCGCTGTATTAGA 47656 Query 32191 TGGTCTAATGCTTCATTAGTT--ACAGTGAAAGCCATATGTGTATAAGATTGCTTAATTT 32248 | || |||| | ||| |||| || || || || ||||||||||| | ||| | Sbjct 47655 CATTTAAAGTCTTC--TTGTTCAACAGAAAATGCAATGTGCGTATAAGATTGATGAATCT 47598 Query 32249 CATTTCTTGGTATAT-CTTCTTCAACATTTAAAGCAATCCATAATCCATTTAAATCAAAA 32307 ||||||| | |||| | || || |||| | || ||||||| |||| || | |||| Sbjct 47597 CATTTCTCGAAATATGCGTC-TCTTCATTAAGCGCTATCCATACTCCACATATGTTAAAA 47539 Query 32308 TACGCTAATTTTCTACCTTTTACTAATAATTTTGCTTGAAGTAtttttttGATAGAATTC 32367 || || |||||||| ||||| |||||||||| | ||| | || ||||| ||| || Sbjct 47538 TAAGCCAATTTTCTTCCTTTAACTAATAATTCTCCTTCTAATA-CTTTTTCATAAAACAT 47480 Query 32368 AATAGATTTTTCCAAGTTTGATACAGAAAAACAAATATGGTTAATGCCC 32416 |||||| ||||| || || ||||| |||||||||||||| || || ||| Sbjct 47479 AATAGAGTTTTCTAAATTAGATACCGAAAAACAAATATGATTGATTCCC 47431 Score = 156 bits (172), Expect = 1e-33 Identities = 130/155 (84%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 33074 AAACAGCTAGCGTGATTA-GCTAGCTGTCCTGTTAAGAAAAGAAAACGGTGTTTAGCAAA 33132 ||||||||||| | || | ||||||||||||| ||| |||||||||||||| ||| |||| Sbjct 179434 AAACAGCTAGC-TAATCACGCTAGCTGTCCTGGTAAAAAAAGAAAACGGTGCTTAACAAA 179492 Query 33133 TGTTGCTGTTGTAATTGCGAATTACAACCATAGTATGAGCAGAAGTAAAAATGTTATGCA 33192 | |||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||| Sbjct 179493 TATTGCTGTTGTAATTGCGAATTACAACTATAGTATGAACAGGGTTGAAAATGTTATGCA 179552 Query 33193 AGAA-AGTTAAATAAAAACTGCATTTTATTGAAAA 33226 | || | | ||| |||| | |||||| | ||||| Sbjct 179553 AAAATAATCTAATGAAAATTTCATTTTGTGGAAAA 179587 Score = 123 bits (136), Expect = 6e-24 Identities = 115/145 (79%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 32591 AAAGAATATTGTATACCAAATTGATAGTAATGCAAGCCATCCAATTGTCAGCGCTATGTA 32650 ||||||||| | |||||||| |||| ||||| | ||||||||| || || || |||| Sbjct 177820 AAAGAATATAGCATACCAAAAAGATATTAATGTGATCCATCCAATAGTAAGAGCGGTGTA 177879 Query 32651 TTTTAAAATTTTCATGATTACTCCTTTTAGGTATAGAGTGCACCAAGCAAGAGGATGTTA 32710 |||||| |||||||||||| |||||||| |||||||||||||| | ||| || | Sbjct 177880 TTTTAAGGTTTTCATGATTAGTCCTTTTA-TTATAGAGTGCACCAGGATGGAGAATTCAA 177938 Query 32711 TTAATTTTTAAACAAAATGCTTATT 32735 ||||||||| |||||| | | |||| Sbjct 177939 TTAATTTTTTAACAAACTTCGTATT 177963 >seq361 Length=20807 Score = 178 bits (196), Expect = 3e-40 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 34201 AAGTAGGTGAATCATCATTTGTTTAACTGGCTGAGAGATTACCAAAAGTTAGAAGAAGAC 34260 |||| ||||||||| | |||| | ||||| | |||||| | |||||||||||||| Sbjct 18014 AAGTGGGTGAATCAGTAAGTGTTCGAATGGCTCAAAGATTATAAGAAGTTAGAAGAAGAA 18073 Query 34261 ATAGCCTATCTGGAATACAACTTAGATAAGACAAAAGCTGAATTAAGACGCTGGGTGAGT 34320 || || ||| | ||||||||||||||||| ||||||| ||||| | || ||| | || Sbjct 18074 ATTGCTTATTTAGAATACAACTTAGATAAATCAAAAGCCGAATTGAAGCGTTGGATTAGC 18133 Query 34321 GGTGATTTGAGAGAAGTACGTTTAACGGCAGAATCTGAAGGTGCAAAAGTTGAAAACCGC 34380 ||||||||| | | ||| | ||||| || ||||| ||||| || || || ||| || Sbjct 18134 GGTGATTTGCAAAATGTAAGATTAACCGCTGAATCGGAAGGGGCTAAGGTAGAAGGGCGG 18193 Query 34381 ATTGAAGCGATTGAATACGAATTAGCACATAAGATGAACGATATGTATAAATTAAA 34436 |||||||| |||||||| |||||||| ||||| ||||| || |||| | ||||| Sbjct 18194 ATTGAAGCAATTGAATATGAATTAGCTCATAAAATGAATGAAGAGTATGATTTAAA 18249 Score = 154 bits (170), Expect = 4e-33 Identities = 263/379 (69%), Gaps = 7/379 (2%) Strand=Plus/Plus Query 25945 GATCCAATGAGTATTTTAAAACTTACATTCGAAGCATTAGAAGGCCAGCAGCAAGCAATC 26004 ||||||||| | ||||||| | ||||| | || |||||||| || || | || Sbjct 16290 GATCCAATGGGGGTTTTAAAGTTAACATTTGCTGCGTTAGAAGGACATACTCAGGAGATA 16349 Query 26005 GAAGAGATAAAGTCGGATGTACAAGACTTGAGAGAAAATACACCATTATTTGCAATTGAA 26064 ||||||||||||| || || | | ||| |||||||||| || | | ||| || || Sbjct 16350 CAAGAGATAAAGTCTGAGGTGAAGGGTTTGCGAGAAAATACGCCGCTTTATGCTATCGAG 16409 Query 26065 TGTGATGAAATCTCTACAGCTGTAAAACGTCAAGGAGTCATATTGTTAGGTGGAAAACAG 26124 ||||| || || | | ||||||||| | ||| || || || || || || ||| | Sbjct 16410 TGTGAAGAGATAACAAGGGCTGTAAAAAGGTTAGGTGTTATGTTATTGGGAGGTAAAAAT 16469 Query 26125 TCTAATGCCTATC--GAAATCGTGGATTAAGAGGGAAAGTTTATCGTGATATCTACAACC 26182 || ||| | |||| || ||| || | ||| |||| | ||| | ||||| || | | Sbjct 16470 TCAAATTCTTATCAGGATATC--GGTCTTAGAAGGAAGTTATATAGAGATATTTATAGTC 16527 Query 26183 AACTATACCGTGAATTCGGAGTGAAAAGTCACAAAGCAATTAAACGTTGTCACTTAAATG 26242 | || | || ||||| || ||||| ||| | ||||| |||||||||| ||| || || Sbjct 16528 AGTTACATCGGGAATTTGGTGTGAATAGTTATAAAGCTATTAAACGTTATCATTTGGATA 16587 Query 26243 TAGCAGTAAAAATAGT---TGAAGAATATACACTTCCAATTGTATTGAGCGAAGAGATTT 26299 |||| || |||| | |||||||||| || |||||| ||| || | ||||| ||| Sbjct 16588 GAGCAATACAAATGATTAATGAAGAATATTCAATTCCAACTGTTTTAAATGAAGAAATTA 16647 Query 26300 CTTTTGTAAATGCACAAAT 26318 | || ||| ||||||| Sbjct 16648 CAGTTAAAAACTCACAAAT 16666 >seq19 Length=184000 Score = 174 bits (192), Expect = 4e-39 Identities = 386/564 (68%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 20301 TTAGAAAAACTTATCTATCATGATTTTGATAAAACACCACATATGACACTAGGTGGTCTG 20360 ||||| |||| | | |||||||||||||| ||||| || |||||| | ||| || Sbjct 64240 TTAGATAAACATGTGTATCATGATTTTGAGAAAACGCCGCATATGTGCGTGTCGGGTATG 64181 Query 20361 ACACGGATGGGAAAAACGGTATTTTTAAAAAATGTAGTTACTTCTCTTACTTTAGCA-CA 20419 |||||| | |||||||| |||||||||||||||||| | ||| | ||| ||| ||| || Sbjct 64180 ACACGGTTTGGAAAAACCGTATTTTTAAAAAATGTAATGACTAGT-TTAATTTTGCAACA 64122 Query 20420 ACCAGAACATATTAATTTATACATTATTGATTTAAAAGGGGGCTTGGAGTTTGGGCCGTA 20479 | | |||| | || || | |||||||||||||| | || | |||||| | || || Sbjct 64121 ATCCCAACACGTGAAATTTTTTATTATTGATTTAAAGGAAGGGCTAGAGTTTAGTCCTTA 64062 Query 20480 TAAGAATTTAAAACAGGTAGTTTCTATTGCTGAAAAGCCCGCAGAAGCTTTTATGATAT- 20538 || | ||| || || || | |||||||| |||| | || ||| || || Sbjct 64061 CAAAGAGTTATCCCAAGTTGTAGAAGTCGCTGAAAA-CCCGAAACAGGCATTA-GAAATG 64004 Query 20539 TAACTAATA-TCCTCAAGAAGATGGAAGAGAAAATGGAATATATGAAATGTAGAC--ATT 20595 | || | | | | ||||||| | | | || ||| ||||| | || | ||| Sbjct 64003 TTGGGAAGAGTACGTGAAAAGATGGTAAAACAGATTGAAATGATGAA--GAAGTCCTATT 63946 Query 20596 ATACGAATGTTGTAGAAACAAATATCAAAGAGCGTTACTTCATAATAGTAGACGAAGGAG 20655 ||| ||| | |||| ||| || | ||| |||| |||||| |||||||| ||||||| Sbjct 63945 TTACCAATATCATAGACACATCGATTAGAGAACGTTGCTTCATCATAGTAGATGAAGGAG 63886 Query 20656 CCGAACTTTGCCCAGATAAAAGTATGA-AAAAAGAACAGC-AAAGGTTATTAGGAGCGTG 20713 | | ||||| ||| | | ||| || | ||| |||| | | ||| ||| ||| Sbjct 63885 CAAATCTTTGTCCA-ACACAAGGATTACCTAAAAAACAACGTGATGTT-TTATTTTTGTG 63828 Query 20714 TCAACAAATGCTCTCTCATATAGCGCGCATAGGTGGTGCTTTAGGTTTTAGATTGATTTT 20773 || | ||| | || | | || | || || |||| |||||| || | | || || Sbjct 63827 CCAGGAGATGTTGTCCGAAGTCGCAAGAATCGGAGGTGGTTTAGGATTCCGGCTCATATT 63768 Query 20774 TTGTACACAGTACCCGACAGGGGATACATTACCGCGCCAAGTAAAACAAAATAGTGATGC 20833 |||||| || || || || ||||||||||| | ||| | ||||||||| |||||| Sbjct 63767 TTGTACGCAATATCCAACCTCTGATACATTACCAAGGCAAATTAAACAAAATGCTGATGC 63708 Query 20834 GAAATTAGGCTTTAGATTACCGAC 20857 |||| |||||||| ||||||| || Sbjct 63707 GAAAATAGGCTTTCGATTACCAAC 63684 Score = 107 bits (118), Expect = 5e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 32835 AAACAAAATCGTTATTTTATAGATCGGAGTGAAATTCAAATGATTGTTAAAGCGACAATA 32894 |||||||||| ||||||||| |||||||||||||| ||||||||||||||| || ||| Sbjct 87260 AAACAAAATCTTTATTTTATGGATCGGAGTGAAATCACAATGATTGTTAAAGCAACGATA 87319 Query 32895 AAACTTGAATTAGATGATT 32913 ||||||||||||| ||||| Sbjct 87320 AAACTTGAATTAGCTGATT 87338 Score = 95.1 bits (104), Expect = 3e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 32997 AAAATTGAATTAGCTGATTTTGTGGAGATGAAATACAAAAATAAGTAATTTAAACCAAAA 33056 ||| ||||||||||||||||||| |||||| |||||||| | ||||||||||||||||| Sbjct 87320 AAACTTGAATTAGCTGATTTTGTAGAGATGGAATACAAAGACAAGTAATTTAAACCAAAT 87379 Query 33057 CGCTATTTTATA 33068 || |||||| || Sbjct 87380 CGTTATTTTGTA 87391 >seq1 Length=1156483 Score = 109 bits (120), Expect = 1e-19 Identities = 188/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 23122 TACGCTGTTTATGTACGAGTTTCAACGGATAGAGATGAGCAAGTTTCATCTGTTGAAAAT 23181 ||||| || ||||| || || ||||| || ||||||| |||||||||||||| ||||| Sbjct 770370 TACGCAGTATATGTTCGTGTGTCAACTGACCGAGATGAACAAGTTTCATCTGTCGAAAAC 770311 Query 23182 CAGATTGATATTTGTCGATATTGGTTAGaaaaaaaCGGATATGAGTGGGATCCAAATGCA 23241 || || ||||| || || | ||||||||| ||| |||| | |||||| || Sbjct 770310 CAAATAGATATCTGCCGGAACTGGTTAGAACGAAATGGATTCAATTGGGATGAGAAACGT 770251 Query 23242 GTATATTTTGACGATGGTATTTCTGGTACAGCTTGGTTAGAACGTCATGCGATGCAACTA 23301 || | | || || || | ||| || | |||| | | | || ||| || Sbjct 770250 GTTTTTAAAGATGAAGGGGTAAGTGGAACTTTATTTGTAGACAGACCATCTATTCAATTA 770191 Query 23302 ATATTAGAAAAAGCAAGACGAAATGAATTGGATACAGTCGTATTTAAATCTATACACCGT 23361 | ||| |||| |||| | ||| ||| | ||| || || ||||||||||| |||| Sbjct 770190 CTGTTAAAAAAGGCAAAAGCAAAAGAAATTAATATGGTTGTTTTTAAATCTATTTCCCGT 770131 Query 23362 TTAGCAAGGGATCTAAGGGATGCCTTAGAAATT 23394 ||||| |||||| | | |||| | ||||||||| Sbjct 770130 TTAGCGAGGGATTTGAAGGATTCGTTAGAAATT 770098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119080299844350