Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_007581.1 Length=185683 Score E Sequences producing significant alignments: (Bits) Value seq19 174 2e-38 >seq19 Length=184000 Score = 174 bits (192), Expect = 2e-38 Identities = 270/380 (71%), Gaps = 8/380 (2%) Strand=Plus/Plus Query 39043 GATTAAAAGTGGCTAAATTACATGAGAAAATAACTAATCAAAGAAAAAATTTTTTGCATA 39102 || ||||||| |||| | | ||||| | || || ||| |||||| ||| ||| | | Sbjct 176603 GAGTAAAAGTAGCTAGAATCCATGAATACATGACAAATGCTAGAAAAGATTACTTGGACA 176662 Query 39103 AGTTATCAATTAAACTAATAAGAGAAAACCA--ATCT-ATAGTTATTGAGGACTTAAAAG 39159 | | |||| | | | || | ||||||| || | || | ||| ||||| || ||| Sbjct 176663 AAATCTCAACTGACATCATCA---AAAACCACGATGTGATCGGTATAGAGGATTTGCAAG 176719 Query 39160 TAAAAAATATGTTACAAAATCATAAGTTAGCAAAAGCAATAAGTGAAGTGTCATGGTATG 39219 || ||||||||| | ||||||||||||||||||||||| ||||| || ||||||| Sbjct 176720 TATTGAATATGTTAAAGAATCATAAGTTAGCAAAAGCAATTAGTGAGGTATCATGGTCAC 176779 Query 39220 AATTTAGAACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCAC 39279 ||||| |||| ||| | ||||||||||| | |||||||| | | || | || | | | Sbjct 176780 AATTTCGAACCATGTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTAT 176839 Query 39280 CATCAAATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAA 39339 | || | | | || ||| |||||||| |||||| || |||||||||| || | Sbjct 176840 CGAAAACATTTCCTTCCAGCCAATTATGTTCTTGTTGTGGATATCAAAATAAAGACGTTA 176899 Query 39340 AAAACTTAGAACTTA-GAGAATGGGTATGTCCTAAATGTGGAATACATCATGATAGAGAT 39398 |||| | |||| || | |||||| |||||| || | | ||| |||||||| ||| Sbjct 176900 AAAA-TCTGAACCTACGTAAATGGGATTGTCCTTCTTGCCGTACACACCATGATAGGGAT 176958 Query 39399 ATAAATGCAAGTAAAAATCT 39418 || || ||||||| ||||| Sbjct 176959 ATTAACGCAAGTATCAATCT 176978 Score = 165 bits (182), Expect = 1e-35 Identities = 265/375 (71%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 39048 AAAGTGGCTAAATTACATGAGAAAATAACTAATCAAAGAAAAAATTTTTTGCATAAGTTA 39107 || || |||| | | ||||| | ||| | ||| |||||| ||| ||| |||| | Sbjct 135522 AAGGTAGCTAGAATTCATGAATACATATCAAATGCTAGAAAAGATTACTTGGATAAAATC 135581 Query 39108 TCAATTAAACTAATAAGAGAAAACCA--ATCT-ATAGTTATTGAGGACTTAAAAGTAAAA 39164 |||| | | || | ||||||| || | || | ||| ||||| || ||||| Sbjct 135582 TCAACTGGCATCATCA---AAAACCACGATGTGATCGGTATAGAGGATTTGCAAGTATTG 135638 Query 39165 AATATGTTACAAAATCATAAGTTAGCAAAAGCAATAAGTGAAGTGTCATGGTATGAATTT 39224 ||||||||| | ||||||||||||||||||||||| ||||| || ||||||| ||||| Sbjct 135639 AATATGTTAAAGAATCATAAGTTAGCAAAAGCAATTAGTGAGGTATCATGGTCACAATTT 135698 Query 39225 AGAACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCACCATCA 39284 |||| ||| | ||||||||||| | |||||||| | | || | || | | | | | Sbjct 135699 CGAACCATGTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTATCGAAA 135758 Query 39285 AATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAAAAAAC 39344 | | | | || ||| |||||||| |||||| || |||||||||| || ||||| Sbjct 135759 ACATTTCCTTCCAGCCAATTATGTTCTTGTTGTGGATATCAAAATAAAGACGTTAAAAA- 135817 Query 39345 TTAGAACTTA-GAGAATGGGTATGTCCTAAATGTGGAATACATCATGATAGAGATATAAA 39403 | |||| || | |||||| |||||| || | | ||| |||||||| ||||| || Sbjct 135818 TCTGAACCTACGTAAATGGGATTGTCCTTCTTGCCGTACACACCATGATAGGGATATTAA 135877 Query 39404 TGCAAGTAAAAATCT 39418 ||||||| ||||| Sbjct 135878 CGCAAGTATCAATCT 135892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594017166954600