Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 seq1 199 6e-46 seq4 165 1e-35 seq361 140 5e-28 seq8 122 1e-22 seq7 100 4e-16 seq6 87.8 3e-12 >seq2 Length=633208 Score = 217 bits (240), Expect = 2e-51 Identities = 213/275 (77%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 164077 ATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAG 164136 ||||||| || || ||| ||| ||||||||| ||||||||| |||||||| |||||| Sbjct 322840 ATTATTTAACCGCATCTTTTAACGCTTTACCAGGTTTGAATGCAGGTACTTTACTTGCAG 322781 Query 164137 CAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAG 164196 | |||||||| || ||||| |||||||||||||| || |||||||||||||| |||||| Sbjct 322780 CGATTTCAATCTCCTCACCTGTTTGTGGGTTACGACCTTTACGAGCCGCACGCTCACGAA 322721 Query 164197 TTTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTGA 164256 |||||| |||| || ||||||| |||||||| | ||||| | |||||| | | || Sbjct 322720 CTTCGAAGTTACCGAATCCGATTAGTTGTACTTTATCACCTTGTTTTAAAGCTTCTAAGA 322661 Query 164257 TACCGCCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTTT 164316 || |||| || |||||||| |||||||| || ||||||||||| | || || Sbjct 322660 TAGAATCAAAAACAGCGTCTACTGCTTTTGTTGCGTCCTTTTTAGAAAGGGAACTTGCTT 322601 Query 164317 CAGCTACGTGGTTGATTAATTCAGTTTTGTTCATG 164351 | || || |||||||| || || ||||||||| Sbjct 322600 CTGCAACAGCATTGATTAAATCTGTCTTGTTCATG 322566 >seq1 Length=1156483 Score = 199 bits (220), Expect = 6e-46 Identities = 211/278 (76%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 164074 TTTATTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTG 164133 || |||||||||| ||| ||| | ||||||||||||||||| || |||||||| | | Sbjct 11670 TTCATTATTTTACAGCTTCTTTTAGTTCTTTACCAGCTTTGAAAGCAGGTACTTTAGAAG 11611 Query 164134 CAGCAATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCAC 164193 | || |||| |||||||||||||||||||||||||| || ||||||| || | || | Sbjct 11610 CTGCGATTTGCATTTCTTCACCAGTTTGTGGGTTACGGCCTGTACGAGCAGCTCTTTCGC 11551 Query 164194 GAGTTTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTG 164253 || |||||||||||| || ||||| | |||||||| | ||| | ||||||| ||| | Sbjct 11550 GAACTTCGAATGTACCGAATCCGATAAGTTGTACTTTTTCACCAGCAGCTAAAGTGTTAG 11491 Query 164254 TGATACCGCCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTG 164313 |||| | | ||| | | |||| || ||||| || |||| ||| || || || Sbjct 11490 TGATTGATTCTACTACAGTTTGTACAACTACAGTAGCTTCTTTTTGAGAAATCTCAGCAT 11431 Query 164314 TTTCAGCTACGTGGTTGATTAATTCAGTTTTGTTCATG 164351 ||| ||||||| || |||||||| |||||||||||| Sbjct 11430 TTTGTGCTACGTTTTTAATTAATTCTGTTTTGTTCATG 11393 >seq4 Length=425142 Score = 165 bits (182), Expect = 1e-35 Identities = 201/274 (73%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 164078 TTATTTTACTGCTGTTTTCAACTCTTTACCAGCTTTGAATGCCGGTACTTTTGTTGCAGC 164137 |||||| || ||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 380964 TTATTTAACAGCTTCTTTTAATTCTTTACCTGCTTTAAATGCAGGAACTTTACCAGCAGC 381023 Query 164138 AATTTCAATTTCTTCACCAGTTTGTGGGTTACGTCCCTTACGAGCCGCACGGTCACGAGT 164197 |||| ||||||||| |||||||| || |||||||| ||||||| | | || || Sbjct 381024 GATTTGAATTTCTTCGCCAGTTTGCGGATTACGTCCTGTACGAGCAGATCTTTCGCGCAC 381083 Query 164198 TTCGAATGTACCAAAGCCGATTAACTGTACTTTGTTACCTTCTGCTAAAGCGTTTGTGAT 164257 ||| || || ||||| ||||||| || ||||| | || | ||| || || | || Sbjct 381084 TTCAAAAGTTCCAAACCCGATTAGTTGAACTTTATCTCCAGATTGTAATGCATTAGCAAT 381143 Query 164258 ACCGCCAAATACTGCGTCTACAGCTTTTGTAGCATCCTTTTTAGAGATTTCTGCTGTTTC 164317 | ||||||| | | ||||||| | ||| ||||||| ||| || || |||| || Sbjct 381144 TGTGTCAAATACGGATTGTACAGCTGCAGAAGCGTCCTTTTGAGAAATATCAGCTGATTG 381203 Query 164318 AGCTACGTGGTTGATTAATTCAGTTTTGTTCATG 164351 |||||||| || |||||||| |||||||||||| Sbjct 381204 AGCTACGTTTTTAATTAATTCTGTTTTGTTCATG 381237 >seq361 Length=20807 Score = 140 bits (154), Expect = 5e-28 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 184145 TAATAAGTCTACACGATTTCCTTTAATAGCGCCACCGGTATCTAGTGCCATCGCCTCACC 184204 ||||| || | ||||||||||||||| || |||||||| ||| || ||||| || || Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 184205 GTATCCTTCCACCCATACTTTACTACCGAGCGGAATGACACTAGGGTCAACGGCAATCAC 184264 |||||||| ||||||||||| || |||||||| || | || ||||| ||||| || Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 184265 TTTTGCTCCGGGATTCGCTGATAGGTCATACCCTGTCTTCGTTAATACTCGTCCTCCATA 184324 ||| ||||| |||| || |||| ||| | |||||||| || || ||||| Sbjct 1168 TTTCATATTTGGATTTGCTGTTAAATCATGCCCCATTGCAGTTAATACACGACCACCATA 1109 Query 184325 TGTACCACCATTTTCACTCGGATGCGCTGTATAAGCCGTAGCCTTTACAGT 184375 | |||||| |||||||||| |||||||| ||||| || | ||| || Sbjct 1108 CG---AACCATTCTCACTCGGATCTGCTGTATATGCCGTCGCTTCTACTGT 1061 >seq8 Length=318055 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 184157 ACGATTTCCTTTAATAGCGCCACCGGTATCTAGTGCCATCGCCTCACCGTATCCTTCCAC 184216 ||| || |||||||| || ||||| |||||| || || || || ||||| ||||| || Sbjct 28326 ACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACCTTCTAC 28385 Query 184217 CCATACTTTACTACCGAGCGGAATGACACTAGGGTCAACGGCAATCACTTTTGCTCCGGG 184276 |||||||||| || | || || || | |||||||| || |||| ||| || Sbjct 28386 CCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCATATTTGG 28445 Query 184277 ATTCGCTGATAGGTCATACCCTGTCTTCGTTAATACTCGTCCTCCATATGTACCACCATT 184336 |||||| | || |||| || | |||||||| || || |||||||| ||||| || Sbjct 28446 ATTCGCAGTTAAATCATGACCCATTGCAGTTAATACACGGCCGCCATATGTGCCACCGTT 28505 Query 184337 TTCACTCGGATGCGCTGTATAAGCCGTAGC 184366 ||| ||||| || |||||||| || ||||| Sbjct 28506 TTCGCTCGGGTGAGCTGTATATGCTGTAGC 28535 >seq7 Length=350003 Score = 100 bits (110), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 184142 CATTAATAAGTCTACACGATTTCCTTTAATAGCGCCACCGGTATCTAGTGCCATCGCCTC 184201 |||||| | || | |||||| |||||||| || | || ||||| || ||||| || Sbjct 229222 CATTAAAACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTC 229163 Query 184202 ACCGTATCCTTCCACCCATACTTTACTACCGAGCGGAATGACACTAGGGTCAACGGCAAT 184261 || || ||||| |||||||||||| || | || || || | |||||||| || || Sbjct 229162 TCCATAGCCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGAT 229103 Query 184262 CA--CTTTTGCTCCGGGATTCGCTGATAGGTCATACCCTGTCTTCGTTAATACTCGTCCT 184319 | || | || ||||| || | || |||| ||| || ||||| || ||||| Sbjct 229102 AATTCTCATATTC--GGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCA 229045 Query 184320 CCATATGTACCACCATTTTCACTCGGATGCGCTGTATAAGCCGTAGC 184366 |||||||| |||||||||||| |||| || ||||| || || || Sbjct 229044 CCATATGT---ACCATTTTCACTTGGATCAGCAGTATACGCTGTCGC 229001 >seq6 Length=382643 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 184140 GGCATTAATAAGTCTACACGATTTCCTTTAATAGCGCCACCGGTATCTAGTGCCATCGCC 184199 |||||||| | ||| | ||| ||||||||||| ||||| ||||| || || || Sbjct 339179 GGCATTAAAACGTCGATTTTATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTGCT 339120 Query 184200 TCACCGTATCCTTCCACCCATACTTTACTACCGAGCGGAATGACACTAGGGTCAACGGCA 184259 | ||||| ||||| ||||||||||| ||| | ||||||||||| || ||||| ||| Sbjct 339119 ACTCCGTAACCTTCAACCCATACTTTTGAACCTAATGGAATGACACTTGGATCAACTGCA 339060 Query 184260 ATCACTTT 184267 || | ||| Sbjct 339059 ATTAGTTT 339052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700457921837600