Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq1 89.7 5e-13 >seq2 Length=633208 Score = 118 bits (130), Expect = 1e-21 Identities = 254/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 133083 TCTGCATTTTCTTTTCTAGTTGATAAA--AAGTCCATAATATCCGCATGGAAAACATTTA 133140 || |||||| |||| | || || || || || ||||||||| |||||||| |||| Sbjct 184328 TCGGCATTTATTTTTTTTGT--ATCAAGGAATTCAATAATATCCCAATGGAAAATGTTTA 184271 Query 133141 GATAGACTGCGCCTGCACCTTGTCTTTGCCCTAATTGATTTGCGTACCGGAAACCA-TCT 133199 ||| ||||| || ||||||| || ||| || | ||||| || || | |||| | ||| Sbjct 184270 AATATACTGCACCGGCACCTTTTCGTTGGCCAAGCTGATTCGCATAT-GAAAACGAATCT 184212 Query 133200 TCTAGCATTTTCATAACAGGGACGACACCACTACCTGCCCCCTCAATTCCCTTAATAGGG 133259 || |||| |||||||||||| || || ||||| | || || || || ||||| | Sbjct 184211 TCAAGCAATTTCATAACAGGTACTACGCCACTTGCAGCGTTGTCGATACCTTTAATTTGC 184152 Query 133260 TCACCAAGAGCTCTTAAGTTTGAAAGATTTATGCCGACTCCTCCGCCAAGTTTAGATAGT 133319 ||||| | || | || || || | |||| | ||||| ||||| | ||| |||| | Sbjct 184151 TCACCGCGTGCGCGTAGCTTAGATAAGTTTAAAGCTACTCCCCCGCCGATTTTCGATAAT 184092 Query 133320 TGAAGTGCACTGTTCAACGTTCTA-CCAATTGAAGACATTGAATCTTCTA-CTTGAATTA 133377 || | ||| | || || ||| | || || ||| | ||| || | || || | Sbjct 184091 TGCATCGCAGTATT-AATGTTAAAGCCGATCGAATTTAAGCTATCGTCCATCTCTAACAA 184033 Query 133378 GAAAACAGCTGACATACTCCCCTCTTCTAAGTCTACCTGCATTTAAAAAAGTAGGGGTTG 133437 |||| || ||| || |||||||| ||| || ||||||||||| || || || | Sbjct 184032 GAAACAAGACACCAT-TTCTCCTCTTCTGCTTCTTCCCGCATTTAAAAAGGTTGGTGTCG 183974 Query 133438 CAGGTTGGTA 133447 | |||||||| Sbjct 183973 CTGGTTGGTA 183964 >seq1 Length=1156483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 136981 TGGACATTGCAGGTCTCGAACCTGCGACCGTTCGGTTATGAGCCGAATGCTCTGACCAAC 137040 ||||| ||| ||| ||||||||| |||||| ||||||||||||| |||||| |||| | Sbjct 1156234 TGGACCTTGTAGGACTCGAACCTACGACCGGACGGTTATGAGCCGTCTGCTCTAACCAGC 1156293 Query 137041 TGAGCTAAACGTCCTTAAT 137059 ||||||||| |||||| || Sbjct 1156294 TGAGCTAAAGGTCCTTTAT 1156312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454471465430400