Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq472 156 5e-33 seq176 122 1e-22 seq193 89.7 6e-13 seq168 89.7 6e-13 >seq472 Length=14052 Score = 156 bits (172), Expect = 5e-33 Identities = 555/859 (65%), Gaps = 10/859 (1%) Strand=Plus/Plus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 ||||| || |||| || || || | | ||| ||| | | |||||| || || || Sbjct 10133 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 10192 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 || |||| || || ||| || ||||| | |||||||| || || || |||| Sbjct 10193 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 10252 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || || ||||| ||||| | || | || || || |||| | ||||| || | | Sbjct 10253 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 10312 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 10313 CAAAGCTTTTGCG-CGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 10371 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 | ||| ||||| || || | | || || || || || | | |||||||| Sbjct 10372 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAA 10431 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||||| ||| | || | |||| ||||||| |||||| || || || |||||||| || Sbjct 10432 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 10491 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||||||||| ||| |||| |||| || | || || || || | |||| || Sbjct 10492 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 10551 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | || || ||||||||||| || ||||| | ||||| | || ||| Sbjct 10552 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 10611 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 ||| | |||| || || | ||| ||| || | || || ||||| || | || || Sbjct 10612 GCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCC 10671 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || ||| || ||| | | || | || | |||||| Sbjct 10672 GTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTGGATG 10729 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 || ||| ||||| || || ||| ||||| |||||||| | | || || |||| Sbjct 10730 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAA 10789 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || || ||||| ||| |||| | | || ||||| ||| ||| | || || Sbjct 10790 ATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGA 10849 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTA 115243 || || || ||||||||||| || || | |||||| | || | | |||||| Sbjct 10850 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGG 10909 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 | ||| | || ||||||| |||||| | ||||| || |||| | ||| ||||| Sbjct 10910 TTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 10969 Query 115304 AACATGTATTG-GGGTGTT 115321 | ||||| ||| ||| ||| Sbjct 10970 AGCATGTGTTGCGGGCGTT 10988 >seq176 Length=46334 Score = 122 bits (134), Expect = 1e-22 Identities = 291/432 (67%), Gaps = 15/432 (3%) Strand=Plus/Plus Query 172526 CCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTGAGG 172582 ||||||| ||||||| ||| || || | | || || || ||| | |||||| Sbjct 12356 CCCTTGGTCGCCTTGACGATGGGGGTGATAAACTCGAGCAAGAAGCCCTTTAGCTTGAGC 12415 Query 172583 AGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCATCG 172642 | || || | |||| | || | || | ||| |||||||||||||| || |||||| Sbjct 12416 AACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATCG 12475 Query 172643 TTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAC 172702 | ||| ||| | ||| ||||| ||| || || || ||| | || || || Sbjct 12476 TGATCTTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTAA 12535 Query 172703 TCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT- 172761 | || ||||| || ||||||||||||| ||||| | ||||| ||| || | ||| Sbjct 12536 ACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGTC 12591 Query 172762 GAGTTGCGCCA---CTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACAC 172818 ||| | || | | || || || || || |||| || || | |||||| || Sbjct 12592 GAGGAGGGCTTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAAAC 12651 Query 172819 ACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATC 172878 ||| |||| || ||||| || |||| ||||| | || ||||| | ||| |||||||| Sbjct 12652 ACCATAGTTGTCTCGACCGACGACAGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAATC 12711 Query 172879 ACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTGTTCGCA 172936 || || |||| ||||||||| ||||| || | | | ||| || || ||||||||| Sbjct 12712 TCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTTGTTCGCA 12769 Query 172937 TCGTCCAACTTG 172948 || || | |||| Sbjct 12770 TCTTCGAGCTTG 12781 >seq193 Length=41482 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || || || || |||||||| ||| || || ||| || ||||||| ||| | Sbjct 4976 TACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCCGAGACG 5035 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 8645 || |||||||| || || || ||| || ||| | ||| | || ||| |||| Sbjct 5036 ACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTC 5095 Query 8646 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAG 8705 ||||| ||||| || || || | | | |||||| |||||| ||||||||||||||| Sbjct 5096 AAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 5155 Query 8706 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 8744 || ||||| ||||||| ||||| || | |||||| Sbjct 5156 TCCCCCCGCCGTGGCCGCACCTTCGTCACGAGAAAGATC 5194 >seq168 Length=48346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 206/304 (68%), Gaps = 16/304 (5%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 || || || | ||| ||||| |||||||| || | | || |||||| || || Sbjct 36480 ACTGTAATTTGACGGTCAAAACGACCTGGACGTAATAACGCTGGGTCAAGAATGTCTGGA 36421 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 10891 ||||| ||||| || |||| || || || ||||| || || |||||||| ||| Sbjct 36420 CGGTTTGTCGCAGCAATGATAATAATACCT---TCGTTTGCACCGAATCCATCCATTTCA 36364 Query 10892 GTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT-ACCA---CCCG 10946 |||| | ||| || | ||||| || || ||||||| | || |||| || | Sbjct 36363 A-CAAGTAATTGGTTCAATGTTTGCTCACGCTCATCAT----GACCACCACCAAGACCTG 36309 Query 10947 CACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTT 11006 | | ||||| ||| || || ||||||||||| ||||||| |||||| || ||||| Sbjct 36308 CGCCACGTTGACGACCTACTGCATCAATTTCATCAATGAAAATGATACAAGGAGCATTTT 36249 Query 11007 CACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCA 11066 ||| |||||| | ||| || || | ||||||||||| |||||||| || | Sbjct 36248 TCTTTGCATTTTCAAATAAATCACGTACACGTGATGCACCGACACCGACAAACATCTCTA 36189 Query 11067 CAAA 11070 | || Sbjct 36188 CGAA 36185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597312942620600