Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_011167.1 Length=53104 Score E Sequences producing significant alignments: (Bits) Value seq7 179 1e-40 seq3 120 1e-22 seq6 100 1e-16 seq4 89.7 2e-13 >seq7 Length=350003 Score = 179 bits (198), Expect = 1e-40 Identities = 213/287 (74%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 40184 GGTGGAAATTATAGTGAATAAATTTAATAAAGTTGTTACGTATGAATTCGGAACAGCGTT 40243 ||| | ||||||||||||||||| ||| ||||| ||||| |||||||| || | || Sbjct 349318 GGTTGGAATTATAGTGAATAAATATAACAAAGTAGTTACTTATGAATTTGGTGTAAATTT 349377 Query 40244 AGTACCAGAAATGTTAGGAATGATGGATGCTCTTGGGTATGAATCTCGTATTATCTCATA 40303 ||| || || ||| | |||||||||| ||||| ||| ||| || || || Sbjct 349378 AGTTCCTGACATGATTCAAATGATGGATAAGCTTGGATATACTTCTAAAATAATATCTCG 349437 Query 40304 TGGAGATAAACAGGGATTAGTTAGATTTGAAACAGCATATCGCCAAGGGAATGAACTAGA 40363 ||||||||| || || | || || ||||||| ||||| |||||||||||||| || Sbjct 349438 TGGAGATAACCAAGGGCTTGTGTATTTCGAAACAGATTATCGTCAAGGGAATGAACTGGA 349497 Query 40364 TCGAGCAACTGCATGGTTAGATGCGAAAGGTCTTAAATACTACTATACAAAAGAATAGTT 40423 ||||||||| ||||||||| ||||||| ||||||| | ||||||||||| ||||| Sbjct 349498 CAAAGCAACTGCTTGGTTAGATACGAAAGGAATTAAATATTTTTATACAAAAGAGTAGTT 349557 Query 40424 TGATGAACAAAAATAAGAGCCGTCCTGTTGGGCGGCtttttttATTT 40470 || | || |||| ||||||| ||| | ||| |||||||||| Sbjct 349558 TGCTAAATAAAA-----AGCCGTCATGT--GACGG--TTTTTTATTT 349595 Score = 93.3 bits (102), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 10/106 (9%) Strand=Plus/Plus Query 13430 AAAAATAAA-GAGCAGCTAGCAAAAGCTAACTGCTC-------AGGT--AATGGAGAAAG 13479 ||||||||| ||||||||||||||||| |||||||| ||| |||||||||| Sbjct 297614 AAAAATAAAAGAGCAGCTAGCAAAAGCCAACTGCTCCTCTCTCAGGAGGAATGGAGAAAT 297673 Query 13480 ATTACCATGTCATCTATAGTATTGACGGAATATTGAGTTTTATTCA 13525 | | ||| | ||||||||||||||||||| || |||||||| ||| Sbjct 297674 ACAATCATATTATCTATAGTATTGACGGAACATAGAGTTTTAATCA 297719 >seq3 Length=500241 Score = 120 bits (132), Expect = 1e-22 Identities = 310/467 (66%), Gaps = 24/467 (5%) Strand=Plus/Plus Query 39649 AAAAAAGGAGATGTTGAATAATGGAAATCAAACAAATGTTAGTGCCAAGAAGTCGATACG 39708 |||||||||||| | | |||||||||| | | ||| |||||| |||| ||| | Sbjct 206 AAAAAAGGAGATAATCAGTAATGGAAATTAGAAAAAAATTAGTGGATCCAAGTAAATATG 265 Query 39709 ATGCCTTATGCCCGTATGAGATGAATCCAACAGAA---ATCACATTTCATAACACGTACA 39765 | || || || |||| || ||||| |||||| | ||||| ||||||| Sbjct 266 GTATAAAGTGTCCCAATACAATGA---CACCAGAATTCATCACAGTACATAATACGTACA 322 Query 39766 ACGACGCACCGGCTATAAATGAG----CGTAATAATGTCGCTAACAATAG--CACTGGAA 39819 | || ||| | || ||||||| |||| || | | || |||| || || Sbjct 323 ATGATGCATCAGCAGAAAATGAGATATCGTA-TATGATTGGGAATAATAATTCAGTG--- 378 Query 39820 CATCATTTCATATCGCTGTGGATGATAAAGAAGCTATTCAGTTAATTCCTTTTAACAGAA 39879 || |||||| | || || ||||| |||||||| | || |||| ||| | | | Sbjct 379 --TCGTTTCATGTTGCAGTAGATGACAAAGAAGCAGTACAAGGTATTCTGTTTGATCGTA 436 Query 39880 ATGCATGGCACGCTGGAGATGGTAATGGGAGAGGGAATCGTCATAGTATTGGGGTGGAAA 39939 |||| ||||| || || |||||||| || | || |||||| | ||| || ||||||| Sbjct 437 ATGCTTGGCATGCAGGTGATGGTAACGGAAATGGTAATCGTAAATCTATCGGAGTGGAAA 496 Query 39940 TTTGTTATTCACAATCAGGCGGAGCGAGATATCGCAAGGCTGAATTAAAT---GCAATTG 39996 |||| ||||| | | || || | |||||| |||||| || ||| |||||| Sbjct 497 TTTGCTATTCTCTAAGCGGTGGGGATAGATATTACAAGGCGGAGGATAATGCAGCAATT- 555 Query 39997 AAGTAATCGCCCAATTAATGATTCAGTTTGATATTCCAATCAGTAAAGTTAAGACTCATC 40056 || || || || ||||||| || || |||| || || ||||| || || ||| Sbjct 556 --GTTATTGCTCAGTTAATGAAACAATTCAATATACCGATTAGTAATGTACGTACACATA 613 Query 40057 AAGAGAGAAACGGGAAGTACTGTCCGCATCGAATGTTAGATGAAGGA 40103 || | | | || ||| | || || ||||||||| | ||||||||| Sbjct 614 AATCGTGGAGTGGAAAGCATTGCCCACATCGAATGCTCGATGAAGGA 660 >seq6 Length=382643 Score = 100 bits (110), Expect = 1e-16 Identities = 92/112 (82%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 48654 TTTTTGTATAAA-GAAAAGACACCCAAAGGTGCCTTCCTCCGACTTGATAACCACTTTAA 48712 ||||| || ||| ||| |||||||| ||||||||||||||||||||| ||||| |||| Sbjct 152471 TTTTTATAAAAAAGAATAGACACCCTAAGGTGCCTTCCTCCGACTTG--AACCATCTTAA 152528 Query 48713 TTTTAATAATATGAGTGTTGGATTCTCATCCAA-TATCATTATATCACATTA 48763 |||||||||||| || ||||| || | ||||| ||| ||| || ||| ||| Sbjct 152529 TTTTAATAATAT--GTATTGGACTCCCGTCCAACTATTATTTTACCACGTTA 152578 Score = 96.9 bits (106), Expect = 1e-15 Identities = 86/105 (82%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 48655 TTTTGTATAAAGAAAAGACACCCAAAGGTGCCTTCCTCCGACTTGATAACCACTTTAATT 48714 |||| ||||||||||||||||| ||||||||||||| ||||||| ||||| |||||| Sbjct 174180 TTTTTCATAAAGAAAAGACACCCTAAGGTGCCTTCCTTCGACTTG--AACCATCTTAATT 174123 Query 48715 TTAATAATATGAGTGTTGGATTCTCATCCAA-TATCATTATATCA 48758 ||||||||| | ||||| || ||||||| ||| ||| || || Sbjct 174122 TTAATAATA----TATTGGACTCCCATCCAACTATTATTTTACCA 174082 >seq4 Length=425142 Score = 89.7 bits (98), Expect = 2e-13 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 13311 AAAATAAAAGAGCGGCTAGCAAAAACTGACCGCTCCGTTT-TGACAAAAGATTCCGGGCA 13369 ||||||||||| | ||||||||||||| || |||| ||| | ||||| |||||||| Sbjct 179976 AAAATAAAAGAACAGCTAGCAAAAACTAACTGCTCTTTTTCCAAAAAAAGGTTCCGGGCT 180035 Query 13370 GAAATCACTGCTAAGATAACTGCTTATGGTTAGTATGGTACAAAATCACGATTAGTAT-- 13427 | || ||||| ||||| | ||||||| |||||| |||||||||| || || ||| Sbjct 180036 GCAAACACTGTTAAGAAGGCAGCTTATGAGTAGTAT-GTACAAAATCGTGAATATTATAA 180094 Query 13428 TCAAAAATAAAGAGC 13442 | ||| ||||||| Sbjct 180095 GGATAAAAAAAGAGC 180109 Score = 84.2 bits (92), Expect = 7e-12 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 12354 TATCATGAATTTTTTGGTAAAAATACTGGTAAATGTGTCCAA-ATGGATAGGAGCATTAT 12412 || ||||||| || ||||||||||| ||||||| | ||||| ||| |||| ||||| Sbjct 178562 TAACATGAATGTTGCGGTAAAAATACCGGTAAATTTATCCAATATGTTTAGGGCTATTAT 178621 Query 12413 TTTGAACAAAAACGCTATTTGAGTAGAAAAGGA 12445 || ||| |||||||||||| | |||||||||| Sbjct 178622 TTCTAACCAAAACGCTATTTTATTAGAAAAGGA 178654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169800220113940