Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_011398.1 Length=50930 Score E Sequences producing significant alignments: (Bits) Value seq4 468 2e-127 >seq4 Length=425142 Score = 468 bits (518), Expect = 2e-127 Identities = 735/1043 (70%), Gaps = 12/1043 (1%) Strand=Plus/Plus Query 759 TTTATTGACACTATTAGATTGTTATTGGGATAATCCTGTTTGGTTTGCAGAGGATATGTT 818 ||||| || | ||| ||| |||||||||| |||| ||| |||||| ||||||||| | Sbjct 186977 TTTATGGAGATTATC-GATGTTTATTGGGATGATCCGGTTGCGTTTGCCGAGGATATGCT 187035 Query 819 AAATTTTAAAGCTGACAAGTGGCAATCTGATGTTCTGATGGCTTTAGCTCAAACCCCAAA 878 |||| | | || | ||||| | ||||| |||| ||| || |||| ||||| Sbjct 187036 GGGTTTTTATCCGGATGAATGGCAGAGAAAAGTTCTTATGGATTTGGCACAAAGTCCAAA 187095 Query 879 AGTATCTATTAGAAGTGGTCAAGGAGTAGGTAAAACTGGATTAGAAAGCATTGCAACTGT 938 || ||| | | ||||||||| || |||||||| || | || ||| | | | Sbjct 187096 GGTTTCTGTGCGTTCTGGTCAAGGGGTTGGTAAAACAGGTCTTGAGTCAGTTGTAGTTAT 187155 Query 939 ATGGTATTTAAGCACTAGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACA 998 |||| | || ||| || ||| ||||| || ||||||||| ||| |||| Sbjct 187156 TTGGTTCCTCTGCTGTAGGCCGAATCCAAAAGTTATTTGTACAGCTCCTACAAAGGAACA 187215 Query 999 ATTATATGACGTACTATGGGCTGAAATAGCTAAATGGCTA--AGTAATAGCAAGGTTGAG 1056 |||| | ||||| |||||||||||||| |||||| || || | ||| ||| | Sbjct 187216 GTTATTTACTGTACTTTGGGCTGAAATAGCGAAATGGTTAGAAGGCAGTGCA--GTTAAA 187273 Query 1057 AAGCTACTTGAGTGGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGG 1116 || |||||| | |||||||||||| ||| || |||| ||| ||| ||| | |||| Sbjct 187274 AATCTACTTAAATGGACTAAAACACGAGTATACATGATTGGCAGTGAGGAACGTTGGTTT 187333 Query 1117 GCTACAGCTAGAACAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATG 1176 ||||| |||||||| ||| ||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 187334 GCTACTGCTAGAACGGCAACGAAGCCGGAGAACATGCAAGGATTTCACGAAGACTATATG 187393 Query 1177 TTATTTGTTGTTGATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGA 1236 |||||||| |||||||||||| || | || || || ||||||||||||||| | || Sbjct 187394 TTATTTGTATGTGATGAAGCTTCTGGTATAGCAGATCCTATTATGGAAGCTATACTCGGT 187453 Query 1237 ACATTATCAGGTGCAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGA 1296 || ||||| |||||||||||||| | | ||||| ||||||||||| ||||| || || Sbjct 187454 ACTTTATCTGGTGCAGAAAATAAATTGTTCTTATGTGGAAACCCAACAAGAACAAGCGGT 187513 Query 1297 ACGTTTTACGATAGCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCT 1356 ||||| ||| |||||| | ||||||||||||||||||| | |||||||||| Sbjct 187514 GTATTTTATGATTCTCATAATCGTGACAGAGATTTATATAAAATACATAAAGTATCTAGC 187573 Query 1357 TTAGACAGCCCTAGAACATCAAAAGATAATATTGAAATGCT-AAAAAGAAAGTACCATGA 1415 ||||| |||||| |||| ||||| ||||| ||| | | ||||||||| || ||| Sbjct 187574 TTAGATAGCCCTCGAACCAGTAAAGACAATATAGAAGTATTGAAAAAGAAA-TATGGTGA 187632 Query 1416 AGGTTCTGACCCTTGGCGTGTCAGAGTACTTGGAGAGTTTCCAAAAGGTGAAAGTGATTC 1475 ||||| ||| ||||||||| | |||||||| || ||||| |||| ||| ||| | Sbjct 187633 GGGTTCAGACGTTTGGCGTGTACGTGTACTTGGTGAATTTCCTAAAGCAGAAGCAGATGC 187692 Query 1476 TTTAATATCTTTAGAAGCTGTTGAAACAAGCA-CAATAAGAGAAGTGAATATATCTAATG 1534 || || | |||||| ||| | | |||||| || | ||||| | | | || Sbjct 187693 ATTTATCCCGTTAGAAATTGTAG-AGCAAGCAGCATCTTGTAAAGTGGA---GCCGACTG 187748 Query 1535 ACTATATATTAAATATAGGGGCGGATATAGCAAGATATGGTGATGATGAAACCATAATAG 1594 | | | | | |||| | || | ||| ||| |||||||||||||||| |||| | Sbjct 187749 GTGAAACACTTGACTTAGGTGTTGACGTTGCACGATTTGGTGATGATGAAACCGTAATTG 187808 Query 1595 CTCCAAGAATAGGTGGGAAAGTATTTGATTTATTAACTTATTCaaaaaaaGATACAATGG 1654 ||||||| ||||| ||||| ||| | ||||||| | | ||| ||||||| |||| Sbjct 187809 CTCCAAGGATAGGAAATAAAGTCTTTAAATTATTAAACCACTATAAACAAGATACTATGG 187868 Query 1655 AAACAGTAGGAAATATATTAAGAGCAGTTGATAAATTTAAAAATATGTATCATCAAATTA 1714 |||| | || | |||| | | || | | ||| | | | ||| | || | | Sbjct 187869 AAACTGCTGGCCACGTATTGAAATTAGCTAAGGAATACATAGCAAAGTACAAGCAGTTAA 187928 Query 1715 ACAGAGTAAAAATAAAAACGGATGATGATGGCTTAGGTGCAGGTGTAACAGATAGATTAA 1774 | ||||| | |||||| |||||| ||| | |||| ||||| || || ||||| | Sbjct 187929 AAAGAGTTGATATAAAAGTCGATGATAGTGGTGTTGGTGGTGGTGTTACGGACAGATTGA 187988 Query 1775 AAGAAGTTATAAGACATGAAAGA 1797 |||||||||| | | |||| || Sbjct 187989 AAGAAGTTATTAAATCTGAACGA 188011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162843869936280