Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq478 156 4e-33 seq20 152 5e-32 seq100 138 1e-27 seq14 87.8 2e-12 seq5392 86.0 6e-12 >seq478 Length=13929 Score = 156 bits (172), Expect = 4e-33 Identities = 178/235 (76%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||| ||||| || || |||||||| Sbjct 483 TACTG-TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTA 425 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| | | |||||| ||| || ||||| || ||||| |||||||||||||||| || Sbjct 424 ATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTC 365 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| |||||||||||||| ||| || ||||| ||||| ||| ||||||| Sbjct 364 TGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGG 306 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 305 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 251 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || |||||||||||| | Sbjct 249 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 190 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||||||||||||||| || ||||| Sbjct 189 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGA 130 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| || |||| |||||| Sbjct 129 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACC 70 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 69 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 23 >seq20 Length=154917 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| ||||| || || |||||||||||| | Sbjct 119 CCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 178 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| |||||||||||||||| || ||||| Sbjct 179 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGA 238 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 239 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 297 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 298 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 345 >seq100 Length=70170 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || || |||||||| | Sbjct 69733 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 69792 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 69793 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 69852 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| || || ||||| |||| |||| ||||||| |||||| Sbjct 69853 ATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCCGACGACTCGAC 69911 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || || || || ||||| |||||||| Sbjct 69912 CTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 69959 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || || ||||||||| | Sbjct 69961 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 70020 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||| | || || || || || || Sbjct 70021 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 70080 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| |||| |||| ||||||| |||||| Sbjct 70081 ATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCCGAGGACTCGAC 70139 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 |||| || | ||| ||||| ||||| || Sbjct 70140 CTCGAGCGTGATCGTCTTGCCCGTCAGCGT 70169 >seq14 Length=201404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| || ||||||||||| || | || | || | | ||| ||| | | | Sbjct 62039 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 62097 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | ||||||| || || || |||||||| | || ||||||||||||||||| ||||| || Sbjct 62098 CGCCGAGAACCCCTTTGACTTTATGAATATGATCTCGCTCGAGGGCAAGACAAACTTCTT 62157 Query 47558 CGAGAAGCGCGT 47569 ||||||||| || Sbjct 62158 CGAGAAGCGTGT 62169 >seq5392 Length=201 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || || |||||||||||| | Sbjct 105 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCG 46 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGC 126991 | |||||| ||| || ||||| || |||||| ||||||||||| Sbjct 45 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468436226800