Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_013696.1 Length=42822 Score E Sequences producing significant alignments: (Bits) Value seq4 293 6e-75 >seq4 Length=425142 Score = 293 bits (324), Expect = 6e-75 Identities = 684/1019 (67%), Gaps = 32/1019 (3%) Strand=Plus/Plus Query 865 GATAAACCAGTTGCTTTTTGTCAGGATATTTTGCATCTTGATCCAGATGAATGGCAG-GA 923 ||| | || ||||| ||| ||||||| || | || |||| |||||||||||| || Sbjct 187004 GATGATCCGGTTGCGTTTGCCGAGGATATGCTGGGTTTTTATCCGGATGAATGGCAGAGA 187063 Query 924 TAAGGTCTTGGATG-ATTTGGCTAAATTCCCAAAAGTCTCAGTTAGATCAGGGCAGGGTG 982 ||| |||| ||| ||||||| || ||||| || || || | || || || || | Sbjct 187064 AAAGTTCTT--ATGGATTTGGCACAAAGTCCAAAGGTTTCTGTGCGTTCTGGTCAAGGGG 187121 Query 983 TTGGAAAAACGGCGTTGGAGGCTGGTGCTATTCTTTGGTTTCTAACATGCCGGCCATATG 1042 |||| ||||| | | ||| | | || || ||||||| || || |||| || Sbjct 187122 TTGGTAAAACAGGTCTTGAGTCAGTTGTAGTTATTTGGTTCCTCTGCTGTAGGCCGAATC 187181 Query 1043 CAAAAGTAATAGCAACTGCTCCGACGATGAAACAATTATACGATGTTCTATGGGCAGAAG 1102 ||||||| || || ||||| || | | |||| |||| ||| || ||||| ||| Sbjct 187182 CAAAAGTTATTTGTACAGCTCCTACAAAGGAACAGTTATTTACTGTACTTTGGGCTGAAA 187241 Query 1103 TGGCTAAGTGGCTGAATAACAGCTTGATTAAAGACTTACTTAAATGGACCAAGACGAAAA 1162 | || || ||| | | ||| ||||| | ||||||||||||| || || | Sbjct 187242 TAGCGAAATGGTTAGAAGGCAGTGCAGTTAAAAATCTACTTAAATGGACTAAAACACGAG 187301 Query 1163 TTTATATGGTTGGCGATTCAGAACGATGGTTTGCTACAGCTCGAACAGCAACTAAACCAG 1222 | || ||| ||||| | ||||| ||||||||||| ||| |||| ||||| || || | Sbjct 187302 TATACATGATTGGCAGTGAGGAACGTTGGTTTGCTACTGCTAGAACGGCAACGAAGCCGG 187361 Query 1223 AAAATATGCAAGGATTTCACGAAGACCATATGTTAATAGTGGTTGATGAAGCATCAGGTG 1282 | || ||||||||||||||||||||| |||||||| | || ||||||||| || ||| Sbjct 187362 AGAACATGCAAGGATTTCACGAAGACTATATGTTATTTGTATGTGATGAAGCTTCTGGTA 187421 Query 1283 TTGCTGATCCCATTATGGAAGCAATATTAGGTACTCTTTCAGGATTTGACAATAAATTAC 1342 | || ||||| ||||||||||| ||| | |||||| | || || || |||||||| Sbjct 187422 TAGCAGATCCTATTATGGAAGCTATACTCGGTACTTTATCTGGTGCAGAAAATAAATTGT 187481 Query 1343 TAATGTGTGGGAACCCCAACAATATTGA-AGGGGTTTTTTATGATTCGCATAATACAGAT 1401 | | ||| |||| |||||||| | | || || ||||||||||| |||||| || Sbjct 187482 TCTTATGT-GGAAACCCAACAAGAACAAGCGGTGTATTTTATGATTCTCATAATCGTGAC 187540 Query 1402 AGAGACAAGTATAGAACGCACAAAGTTTCTAGTTACGATAGCAAACGTACTAACAAAGAA 1461 ||||| |||| || || ||||| ||||| | |||||| || || | ||||| Sbjct 187541 AGAGATTTATATAAAATACATAAAGTATCTAGCTTAGATAGCCCTCGAACCAGTAAAGAC 187600 Query 1462 AATATTCAAATGCTCATCGATAAGTATGGTGAGAATAGCGATGTAGCTCGTGTTCGTATT 1521 ||||| || | | | | || ||||||||| | || || ||||| ||| | Sbjct 187601 AATATAGAAGTATTGAAAAAGAAATATGGTGAGGGTTCAGACGTTTGGCGTGTACGTGTA 187660 Query 1522 TATGGTGAATTTCCCAAAGGCGCACTTGATTCATTTATCAGCCTTGAAATTGTTGAGTTT 1581 |||||||||||| |||| | | ||| |||||||| | |||||||| ||| Sbjct 187661 CTTGGTGAATTTCCTAAAGCAGAAGCAGATGCATTTATCCCGTTAGAAATTGTAGAGCAA 187720 Query 1582 GCCAAAGATATTAATATTTCTGATTCAGAAT--TAAAACATGTTAGAGAAGGACACATAG 1639 || | || || || || | || | | ||||| | || ||| Sbjct 187721 GC--AGCATCTT-GTA-AAGTGGAGCCGACTGGTGAAACACTT----------GACTTAG 187766 Query 1640 GTGTCGATGTGGCTCGTTTTGGTGATGATTCAACGATAGTATTTCCTAGAATCGGAGCTA 1699 |||| || || || || |||||||||||| ||| || | ||| || || ||| || Sbjct 187767 GTGTTGACGTTGCACGATTTGGTGATGATGAAACCGTAATTGCTCCAAGGATAGGAAATA 187826 Query 1700 AAGCATTGCCATTTGAAAAATATAGTAAGCAAGATACCATGCAGACCACTGGTCGAGTTT 1759 ||| || ||| ||| | ||| |||||||| ||| | || |||| | || | Sbjct 187827 AAGTCTTTAAATTATTAAACCACTATAAACAAGATACTATGGAAACTGCTGGCCACGTAT 187886 Query 1760 TAAAAGCGGCGAAAAGGATGATGGATGACTATCCTACAA-----TaaaaaaaGTGTTCAT 1814 | ||| || ||||| || || | | ||||| |||||| ||| || Sbjct 187887 TGAAATTAGC--TAAGGA--ATACAT-AGCAAAGTACAAGCAGTTAAAAAGAGTTGATAT 187941 Query 1815 CAAAGTAGATGATACAGGTGTTGGTGGAGGTGTTACTGATAGACTTAAAGAAGTAATTA 1873 ||||| ||||||| ||||||||||| |||||||| || ||| | |||||||| |||| Sbjct 187942 AAAAGTCGATGATAGTGGTGTTGGTGGTGGTGTTACGGACAGATTGAAAGAAGTTATTA 188000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136899947562560