Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq4101 98.7 1e-15 seq69 98.7 1e-15 seq9 98.7 1e-15 seq1 98.7 1e-15 seq2763 96.9 5e-15 seq2489 96.9 5e-15 seq16 86.0 9e-12 >seq4101 Length=257 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| ||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 182 TGGTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCA 241 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||| ||| Sbjct 242 ACTGAGCTAATGGC 255 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 189965 GTGCGGATGGTCGGACTCGAACCGACACGCCTATGGCGCTAGAACCTAAATCTAGTGCGT 190024 |||||| || ||| ||||||| |||||| | ||||||||| ||||| |||||||||| Sbjct 87 GTGCGGGTGAAGGGAGTCGAACCCCCACGCCAAAGGCGCTAGATCCTAAGTCTAGTGCGT 146 Query 190025 CTGCCAATTTCGCCACATCCGC 190046 ||||||||| ||||||| |||| Sbjct 147 CTGCCAATTCCGCCACACCCGC 168 >seq69 Length=88854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 || || ||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 87946 TGATGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCA 88005 Query 191922 ACTAAGCTAACGGCGCGTTGTTTGGCAGGGGCGGTAGGAGTCGAACCCACCTCA--ACGG 191979 ||| |||||| ||| || | |||| ||| | ||| ||||| ||| | || |||| Sbjct 88006 ACTGAGCTAATGGCTCG-TAAATGGCTGGGCTAGCTGGATTCGAA-CCAGCGCATGACGG 88063 Query 191980 ATTTGGAATCCGCCGCATAACCGATTTGCTACGCCCCTATAATCTTT 192026 | | | |||| || | |||| || |||| ||| |||| ||| Sbjct 88064 AGTCAAAGTCCGTTGCCTTACCGCTTGGCTATAGCCCATTAATATTT 88110 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 191864 GTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAAC 191923 ||| ||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| Sbjct 534 GTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAAC 593 Query 191924 TAAGCTAACGGCGCGT 191939 | |||||| ||| ||| Sbjct 594 TGAGCTAATGGCTCGT 609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 191314 AATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTTT 191373 || |||| ||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct 610 AAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTTA 669 Query 191374 CCAACTTGGCGATACCCC 191391 || |||||| ||| ||| Sbjct 670 CC-GCTTGGCTATAGCCC 686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 191314 AATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTTT 191373 || |||| ||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct 88024 AAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTTA 88083 Query 191374 CCAACTTGGCGATACCCC 191391 || |||||| ||| ||| Sbjct 88084 CC-GCTTGGCTATAGCCC 88100 >seq9 Length=252781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| ||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 29618 TGGTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCA 29559 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||| ||| Sbjct 29558 ACTGAGCTAATGGC 29545 >seq1 Length=1156483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| ||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 1155677 TGGTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCA 1155736 Query 191922 ACTAAGCTAACGGC 191935 ||| |||||| ||| Sbjct 1155737 ACTGAGCTAATGGC 1155750 >seq2763 Length=485 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 191863 GGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAA 191922 |||| ||| ||| ||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 485 GGTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAA 426 Query 191923 CTAAGCTAACGGC 191935 || |||||| ||| Sbjct 425 CTGAGCTAATGGC 413 >seq2489 Length=589 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 191863 GGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAA 191922 |||| ||| ||| ||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 589 GGTGAGCCATGAAGGACTCGAACCTTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAA 530 Query 191923 CTAAGCTAACGGC 191935 || |||||| ||| Sbjct 529 CTGAGCTAATGGC 517 >seq16 Length=199848 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 191313 AAATTGGCGGGGGTAGCTGGACTCGAACCAGCGAATGACGGAATCAAAATCCGTTGCCTT 191372 ||| |||| ||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct 1385 AAAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTT 1326 Query 191373 TCCAACTTGGCGATACCCC 191391 || |||||| ||| ||| Sbjct 1325 ACC-GCTTGGCTATAGCCC 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720680545341600