Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq472 134 2e-26 seq168 93.3 5e-14 >seq472 Length=14052 Score = 134 bits (148), Expect = 2e-26 Identities = 430/658 (65%), Gaps = 8/658 (1%) Strand=Plus/Plus Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| ||||| || |||||||| ||| || || || |||||||| | ||| | Sbjct 10220 CCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTG 10279 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492 |||||||| ||| | | ||||| || | ||| | | | ||| |||||| ||| Sbjct 10280 CCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTTTT 10338 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 || ||| | || |||| ||||| || | ||||| | || |||| || || || Sbjct 10339 CTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGAC 10398 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 || || || || | | |||| |||||||| | ||||| || | |||| || Sbjct 10399 TTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGAC 10458 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 | || |||||| || || |||||||| | ||| |||| || ||||| ||| | || Sbjct 10459 ACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTC 10518 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| ||| || |||| || || | || || | |||||| || || Sbjct 10519 CTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTC 10578 Query 110733 GAGATAGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGT 110789 ||| |||| |||| || ||| ||| || ||| ||| || ||||| || || Sbjct 10579 GAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGT 10638 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | ||| |||| | |||||| || | ||| || | || | || || || || || Sbjct 10639 GTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTCGTGCCGGCGAT 10698 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 ||| | || || |||| |||||| || ||| |||||||| || ||| Sbjct 10699 GTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGA 10758 Query 110910 AATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG 110968 || | || ||| ||| | || || | ||||| || ||||||||||| |||| | | Sbjct 10759 GATGAGCGCGCACGTCT-TAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCG 10817 Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | || || || || || | ||| || |||||||||| || |||||||| || || Sbjct 10818 TGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 10875 >seq168 Length=48346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 254/383 (66%), Gaps = 22/383 (6%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||| || ||||||||||| || | || || |||||||| || |||||| Sbjct 36475 AATTTGACGGTCAAAACGACCTGGACGTAATAACGCTGGGTCAAGAATGTCTGGACGGTT 36416 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG--TCGAAACCGTCCATTTCTGTGAGA 11613 ||| || ||||||| | ||| || | ||| |||| || |||||||| || Sbjct 36415 TGTCGCAGCAATGATAATAATACC--TTCGTTTGCACCGAATCCATCCATTTCAACAAGT 36358 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC---ACCTGCCGAACGC 11670 | ||||| | || || ||||||||||| | || | ||| |||||| ||| Sbjct 36357 AATTGGTTCAATGTTTGCTCACGCTCATCAT--GACCAC-CACCAAGACCTGCGCCACGT 36301 Query 11671 TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730 | ||| || || ||||| ||||| ||||| | |||||| || || ||| Sbjct 36300 TGACGACCTACTGCATCAATTTCATCAATGAAAATGATACAAGGAGCATTTTTCTTTGCA 36241 Query 11731 TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 | ||| || | ||||||||||| || || ||||| || |||||||| ||||||| Sbjct 36240 TTTTCAAATAAATCACGTACACGTGATGCACCGACACCGACAAACATCTCTACGAAGT-- 36183 Query 11791 GCGGCAGAA-CACTGA-----ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 ||||| |||||| | ||| ||||| || |||||| || | || || || Sbjct 36182 ----CAGAACCACTGATAGAGAAGAATGGAACGCCAGCCTCACCTGCAACAGCACGTGCT 36127 Query 11845 AGGAGAGTCTTACCCGTACCAGG 11867 | | ||| ||||| ||||| || Sbjct 36126 AATAAAGTTTTACCTGTACCTGG 36104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588935912821000