Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq472 158 1e-33 seq121 140 4e-28 seq193 113 5e-20 seq168 91.5 2e-13 seq176 82.4 9e-11 >seq472 Length=14052 Score = 158 bits (174), Expect = 1e-33 Identities = 557/862 (65%), Gaps = 16/862 (2%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 10133 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 10192 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || ||| ||||| || | |||||||||||| || ||||| Sbjct 10193 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 10252 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || || ||||||||||| | || | || || || ||| | | ||||| || | | Sbjct 10253 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 10312 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | ||| || | | | ||||| || |||||| ||||| || | | Sbjct 10313 CAAAGCTTTTGCGCGGGGATCGTTTTC-TTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 10371 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | ||| |||||||| || | ||| || || || || | | | || ||||| Sbjct 10372 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAA 10431 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 |||| ||| | || | |||| || |||| ||||||||| || |||||||| || | Sbjct 10432 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 10491 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | ||| | || || | || ||||| || | || ||||| Sbjct 10492 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 10551 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 || | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 10552 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGG---GACGCTT 10608 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| || | ||| Sbjct 10609 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAAT 10668 Query 106996 ACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | || | | | ||| Sbjct 10669 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGG--TCGCGCGGATGTTGTGG 10726 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| ||||| |||| ||| | |||| || | Sbjct 10727 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCG 10786 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || || || | || || || ||||| | | || ||||| || || | |||||| Sbjct 10787 TAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 10846 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 10847 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATA 10906 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | || |||||| |||||||| | ||||||||||||| ||| |||||| Sbjct 10907 AGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGC 10966 Query 107294 ATAAACATGTATTG-GGGTGTT 107314 || | ||||| ||| ||| ||| Sbjct 10967 ATGAGCATGTGTTGCGGGCGTT 10988 >seq121 Length=61750 Score = 140 bits (154), Expect = 4e-28 Identities = 282/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 26236 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 26177 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 26176 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 26117 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | ||||| Sbjct 26116 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 26057 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCA 7137 ||| || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 26056 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 25998 Query 7138 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 7197 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 25997 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 25938 Query 7198 ATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAG 7257 ||||||| ||||| ||||| || || | |||||| ||| | || || | Sbjct 25937 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 25878 Query 7258 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 7313 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 25877 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 25822 >seq193 Length=41482 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || |||||| ||| | || || Sbjct 4969 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5028 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5029 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5088 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 5089 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5148 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 5149 CCACGAGTCCCC 5160 >seq168 Length=48346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 256/390 (66%), Gaps = 16/390 (4%) Strand=Plus/Minus Query 9175 GAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATAT 9234 || ||||| || | ||| ||||| ||||||||||| | | ||| ||||| || | Sbjct 36485 GATCTACTGTAATTTGACGGTCAAAACGACCTGGACGTAATAACGCTGGGTCAAGAATGT 36426 Query 9235 CAACGCGATTCGTCGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCAT 9292 | || || ||||| || |||| || ||||||| |||| | | || |||||||| Sbjct 36425 CTGGACGGTTTGTCGCAGCAATGATAATAATACCTTCGTTTGC--ACCGAATCCATCCAT 36368 Query 9293 CTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC 9352 || | | |||||| | ||||| || || ||||||| | | ||| || Sbjct 36367 TTCAACAAGTAATTGGTTCAATGTTTGCTCACGCTCATCATGACCACCACCAAGACCTGC 36308 Query 9353 ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTC 9412 | ||||| || || |||||||| ||||||||||| | ||||| || ||||| Sbjct 36307 GCCACGTTGACGACCTACTGCATCAATTTCATCAATGAAAATGATACAAGGAGCATTTTT 36248 Query 9413 GCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCAC 9472 || ||||||| | ||| || || | | || || ||||| ||||||||||| || Sbjct 36247 CTTTGCATTTTCAAATAAATCACGTACACGTGATGCACCGACACCGACAAACATCTCTAC 36188 Query 9473 AAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGC 9526 |||| | ||| || || || ||| || || || ||||| |||| || Sbjct 36187 GAAGT------CAGAACCACTGATAGAGAAGAATGGAACGCCAGCCTCACCTGCAACAGC 36134 Query 9527 TCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | | ||| ||||| |||||||| Sbjct 36133 ACGTGCTAATAAAGTTTTACCTGTACCTGG 36104 >seq176 Length=46334 Score = 82.4 bits (90), Expect = 9e-11 Identities = 227/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||| ||||| || ||||| | ||| ||| | ||| ||||| || || Sbjct 12448 GATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 12507 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 12508 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 12567 Query 169298 GAGATCG-TTGAACTCTTGG----TTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || | || | | ||| ||| | | || || || || Sbjct 12568 --GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGC--CCGCCGCTTCACGCACG 12622 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| || || ||||||| || || || ||||| | ||| Sbjct 12623 TTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCCAGA 12682 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT--TC 169470 |||| ||| || || | || || ||||| || || || | ||||| || ||||| | Sbjct 12683 CCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTGGAC 12742 Query 169471 CAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTG 169511 | | | | |||||| || ||||| || || || | |||| Sbjct 12743 CCG--TTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTG 12781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589940644431800