Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_015253.1 Length=127065 Score E Sequences producing significant alignments: (Bits) Value seq19 174 1e-38 >seq19 Length=184000 Score = 174 bits (192), Expect = 1e-38 Identities = 367/544 (67%), Gaps = 14/544 (3%) Strand=Plus/Plus Query 123258 AGCCTATAAGTTTAGAATCTATCCAAATGTAGAACAAGAGATACTTATTGCTAAAACAAT 123317 ||| ||||| ||| | |||||||||||| || ||||| || || ||| |||||| || Sbjct 175923 AGCATATAAATTTCGTATCTATCCAAATCAAGCACAAGCGACCCTAATTAATAAAACGAT 175982 Query 123318 TGGTTGCTCTCGTTTCATCTATAATCATTTTCTTGGCTTATGGAATGAAACATATACTCA 123377 ||| || |||||||| | | |||||||| || ||||| || | |||| | | Sbjct 175983 TGGCTGTTCTCGTTTTGTATTCAATCATTTCCTATCTCTATGGGATAATGCATACAAAGA 176042 Query 123378 AACTGGAAAAGGTTTAACATTTAACGCCTGTTGTGCGATGCTTCCTAAGATGAAAAAAGA 123437 ||| ||||||||||| |||| | | || | ||| | |||||| ||||| | Sbjct 176043 AACAGGAAAAGGTTTGACATATGGTACATGCTCTGCCAAACTTCCTGCCATGAAGA---- 176098 Query 123438 AGAAGAAACAGAATGGCTAAAAGAAGTGGATAGCAGGGCTATTCAATCTTC-GTTAAAAC 123496 |||| | |||||||||||||||||||| | || ||||| || || ||| | Sbjct 176099 --AAGAGTTTGTTTGGCTAAAAGAAGTGGATAGTATTGCGATTCAGTCGTCTGTTCGCA- 176155 Query 123497 ACTTGGCAGACGCTTATTCTCGTTTCTTTAAGAAACAAAATGCTAGACCTAAATTCAAGA 123556 || | || || || ||| | || || || || ||||||||| | || ||||| Sbjct 176156 ACCTTGCGGATGCATATACACGATTTTTCAAAAAACAAAATAGTGCCCCGCGTTTCAAAT 176215 Query 123557 GTAAAAAGAACCCAGTTCAAAGTTATACTACTAAACGTACAAAGACTAATATTGCTATTG 123616 |||||||| || ||| |||||| || |||| ||||| |||||||| ||| Sbjct 176216 CCAAAAAGAATAACGTACAATCTTATACCACAAAACAAACAAATGAAAATATTGCCGTTG 176275 Query 123617 TTGATAAGAAATTGAAGTTACCTAAATTGGGACTTATTAAGTTTTCACAAA---GTAAAG 123673 | || ||| | ||||| || ||| | || ||| || ||| | ||| || ||| Sbjct 176276 AAGGGAACAAAATAAAGTTGCCCAAACTAGGCCTTGTTCGATTTGCCAAAAGTCGTGAAG 176335 Query 123674 TTCTTAAAGGACGTATTATCAATGCTACTATTTCACGTAGACCAAGTGGTAAATACTTTG 123733 | | ||||||||||| | ||||| ||| || ||| | || ||| | |||||||| Sbjct 176336 TAC---AAGGACGTATTGTAAATGCGACTGTTAGACGGAACCCTTCTGGCAGATACTTTG 176392 Query 123734 TTTCATTGCTATGTGAAGAAGAAATATATGAACTACCTAAAGTAAATTCTTCAATAGGTA 123793 | |||||| || |||| |||| | | ||||| || ||| | |||||| || || | Sbjct 176393 TGTCATTGTTAGTTGAAACAGAAGTGCAAGAACTTCCGAAAACACATTCTTACATTGGAA 176452 Query 123794 TTGA 123797 | || Sbjct 176453 TGGA 176456 Score = 159 bits (176), Expect = 3e-34 Identities = 402/609 (66%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 123227 AAAAGGAGGGAGATAAAATGCTAAGATACAAAGCCTATAAGTTTAGAATCTATCCAAATG 123286 ||| ||||| || ||||| ||| | ||||||||||| ||| | |||||||||||| Sbjct 134806 AAATGGAGGTGAATCAAATGATAATTAATAAAGCCTATAAATTTCGTATCTATCCAAATC 134865 Query 123287 TAGAACAAGAGATACTTATTGCTAAAACAATTGGTTGCTCTCGTTTCATCTATAATCATT 123346 || ||||| || || ||| ||||| || ||||| ||||| || | | ||||||| Sbjct 134866 AAGCACAAGCAATTCTAATTAACAAAACGATAGGTTGTTCTCGCTTTGTATTCAATCATT 134925 Query 123347 TTCTTGGCTTATGGAATGAAACATATACTCAAACTGGAAAAGGTTTAACATTTAACGCCT 123406 | || | ||||| || | |||| | | || || ||||||||||||| | | | Sbjct 134926 TCCTATCCCTATGGGATCACGCATACAAAGAGACGGGGAAAGGTTTAACATATGGTACAT 134985 Query 123407 GTTGTGCGATGCTTCCTAAGATGAAAAAAGAAGAAGAAACAGAATGGCTAAAAGAAGTGG 123466 | | ||| | |||||| ||||| | |||| | ||||| |||||||||| Sbjct 134986 GCTCTGCCAAACTTCCTGCCATGAAGA------AAGAGTTTGTTTGGCTCAAAGAAGTGG 135039 Query 123467 ATAGCAGGGCTATTCAATCTTC-GTTAAAACACTTGGCAGACGCTTATTCTCGTTTCTTT 123525 |||| | || ||||| || || ||| | || | || || || ||| | || || || Sbjct 135040 ATAGTATTGCGATTCAGTCGTCTGTTCGCA-ACCTTGCGGATGCGTATACACGATTTTTC 135098 Query 123526 AAGAAACAAAATGCTAGACCTAAATTCAAGAGTAAAAAGAACCCAGTTCAAAGTTATACT 123585 || ||||||||| | || ||||| |||||||| | ||| |||||| Sbjct 135099 AAAAAACAAAATAGTGCCCCGCGTTTCAAATCCAAAAAGAATAACATACAATCTTATACC 135158 Query 123586 ACTAAACGTACAAAGACTAATATTGCTATTGTTGATAAGAAATTGAAGTTACCTAAATTG 123645 || |||| ||||| |||||||| ||| | || ||| | ||||| || ||| | Sbjct 135159 ACAAAACAAACAAATGAAAATATTGCCGTTGAAGGGAACAAAATAAAGTTGCCCAAACTA 135218 Query 123646 GGACTTATTAAGTTTTCACAAAGTAAAGTTCTTAAAGGACGTATTATCAATGCTACTATT 123705 || ||| || ||| | ||||| | | | ||||||||| | ||||| ||| || Sbjct 135219 GGCCTTGTTCGATTTGCCAAAAGTCGTGAAGTAGAGGGACGTATTGTAAATGCGACTGTT 135278 Query 123706 TCACGTAGACCAAGTGGTAAATACTTTGTTTCATTGCTATGTGAAGAAGAAATATATGAA 123765 ||| | || |||| ||| ||||| ||| | || |||| |||| || | ||| Sbjct 135279 AGACGAAACCCTTCAGGTAGATATTTTGTGTCACTATTAGTTGAAACAGAAGTACAAGAA 135338 Query 123766 CTACCTAAAGTAAATTCTTCAATAGGTATTGACTTAGGTATTGCTGATTTTGCTATCCTT 123825 || || ||| | |||||| || || || || |||| | ||||| || || | Sbjct 135339 CTTCCGAAAACACATTCTTACATTGGGATAGATGTAGGACTAAAAGATTTCGCCATTTTG 135398 Query 123826 TCGGATGGA 123834 || |||||| Sbjct 135399 TCAGATGGA 135407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406456225393770