Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_015274.1 Length=56506 Score E Sequences producing significant alignments: (Bits) Value seq2 163 1e-35 seq453 89.7 2e-13 >seq2 Length=633208 Score = 163 bits (180), Expect = 1e-35 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 305 TGCCCTAAAACAGGACAGCCTGACTTCGCGAATGTTTTCATTAGTTACATTCCAAACGAA 364 ||||| ||||||||||| || || || || | ||| ||||| || |||||| | || Sbjct 179486 TGCCCGAAAACAGGACAACCAGATTTTGCAACAATTTATATTAGCTATATTCCAGAGCAA 179545 Query 365 AAGATGGTTGAATCTAAATCATTGAAATTGTACTTATTCAGTTTCCGTAACCACGGTGAC 424 || ||||| || |||||| || || ||||| ||||| |||||||| || || ||||| Sbjct 179546 AAAATGGTAGAGAGTAAATCTTTAAAGTTGTATTTATTTAGTTTCCGCAATCATGGTGAT 179605 Query 425 TTCCACGAAGATTGCATGAACATTATTTTGAATGACTTGTATGAATTGATGGAACCTAAG 484 ||||| ||||||||||||||| ||||| |||| || || | |||| ||||| || Sbjct 179606 TTCCATGAAGATTGCATGAACGTTATTATGAACGATTTAATTAAATTAATGGATCCACGT 179665 Query 485 TACATTGAAGTCATGGGCCTATTCACTCCTCGTGGTGGAATTTCAATTTACCCATTCGTC 544 || ||||| || ||| |||||| || |||||||| ||||||||| | |||| | | Sbjct 179666 TATATTGAGGTATGGGGGAAATTCACACCACGTGGTGGTATTTCAATTGATCCATACTGC 179725 Query 545 AAC 547 ||| Sbjct 179726 AAC 179728 Score = 104 bits (114), Expect = 8e-18 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 1923 TGAG-AAAATGCCTATCATGGAAATTTTCGGTCCTACAATTCAAGGTGAAGGAATGGTTA 1981 |||| ||||| ||| || | ||||| |||||||| || ||||||||||||||||||||| Sbjct 178587 TGAGTAAAATCCCTGTCTTAGAAATATTCGGTCCGACTATTCAAGGTGAAGGAATGGTTG 178646 Query 1982 TAGGTCAAAAGACTATTTTCATTCGAACTGGTGGATGCGACTATCATTGCAACTGGTGTG 2041 |||| |||||||| || || || || || | ||| || || ||| || ||||||| Sbjct 178647 TAGGGCAAAAGACAATGTTTATCCGTACAGCTGGTTGTGATTATAGCTGTGCTTGGTGTG 178706 Query 2042 ACTCAGCCTTTACCTGG 2058 | || || ||||| ||| Sbjct 178707 ATTCTGCTTTTACGTGG 178723 >seq453 Length=14939 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/170 (73%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 10412 TATT-GAAATTGATGCTGCTTCTAATAATGGGGTAGAAAATGTTCGAAACATTATTGAAG 10470 |||| ||||||||||| ||||| ||||| || ||||| | ||||| | |||| || Sbjct 11693 TATTAGAAATTGATGCGGCTTCAAATAACGGTGTAGATGAAATTCGAGATATTAGAGATA 11752 Query 10471 ATTCTAGATACAAGTCTATGGACAGC-GAGTTCAAAGTTTACATCATTGACGAGGTTCAT 10529 | | |||| || | | | | || | ||||| ||||| ||||| || ||||| Sbjct 11753 AAGTAAAATACGC-TCCAAGTGCTGTAGAATATAAAGTATACATTATTGATGAAGTTCAC 11811 Query 10530 ATGCTTTCAACCGGAGCATTTAATGCGCTGTTGAAAACATTAGAAGAGCC 10579 |||||||| | || ||||| |||||||| || ||||| ||||||||||| Sbjct 11812 ATGCTTTCTATGGGTGCATTCAATGCGCTTTTAAAAACCTTAGAAGAGCC 11861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180685916206120