Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq137 105 4e-18 seq49 98.7 6e-16 seq100 91.5 1e-13 >seq137 Length=57057 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| | | | | || |||| || Sbjct 53201 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 53142 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 53141 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 53082 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| ||||| || Sbjct 53081 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 53022 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCA 34980 |||||||| ||||| |||||||| |||| Sbjct 53021 CCCGTGAGGGTCTTGACAAAGATTTGCA 52994 >seq49 Length=107377 Score = 98.7 bits (108), Expect = 6e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| | | | | || |||| || Sbjct 55452 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 55393 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 55392 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 55333 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| || || || Sbjct 55332 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 55273 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||||| |||||||| |||||||| ||| Sbjct 55272 CCCGTAAGAGTCTTGACAAAGATTTGC 55246 >seq100 Length=70170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| || |||| || | || |||| || Sbjct 69751 ACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCCTCG 69810 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | ||| ||||||||| | || | || |||||||| | Sbjct 69811 AGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 69870 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| || || || || Sbjct 69871 ATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCTTG 69930 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| ||||||||||||||| Sbjct 69931 CCCGTAAGCGTCTTGACAAAGATCTGCATA 69960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324612057009960