Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_015568.1 Length=41090 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-24 >seq1 Length=1156483 Score = 125 bits (138), Expect = 2e-24 Identities = 214/305 (70%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 40748 AGAAGGCATTAATCTTATACAAAATTTATTTGATAGTGGTATTTCTGTTCATGTGCTTAA 40807 |||||| ||| | || || ||| |||||||| || ||| | ||||| || | || Sbjct 465602 AGAAGGTATTGAAATTGTAGAAATATTATTTGAAAGAGGTGTCAAGGTTCACGTTTTAAA 465661 Query 40808 TGTTGGGCTTTTAGAAAATACTACTCTTGGCAAGTTTTTTATAACAACCT-TGCTTGCAG 40866 |||||||| |||| ||||| || | ||| |||| || | |||| | || | || | Sbjct 465662 CGTTGGGCTACTAGAGAATACGACAATGGGCC-GTTTCTTCTTACAAACGATGTTAGCGG 465720 Query 40867 TTGCAGAAATGGAAAGGAATCTAATTTTAGAACGAACTTTTGCAGGTAAGGAGATAGCAA 40926 | |||||||||||||| || |||| ||||||| ||| || ||| || || || |||| Sbjct 465721 TGGCAGAAATGGAAAGAAACTTAATCCTAGAACGTACTGCTGAAGGAAAAGAAATTGCAA 465780 Query 40927 AGCAAAATCCTAATTTCCGGGAAGGTAGACCTAAAAAATATACTAAGATGCAAATGGAAC 40986 ||| || || | | ||||| |||||||| || || || | | |||||| | | Sbjct 465781 GGCAGAACCCAGACTATAAAGAAGGCAGACCTAACAAGTACACGACAAAACAAATGAATC 465840 Query 40987 ATGCTTTAGAGTTATTAAAAACTAATTCTTATACGCAAGTAG-AGAAAATGACAGGGATT 41045 | ||| | | ||||| ||||| | || || ||||||| |||||| |||||| ||| Sbjct 465841 ACGCTATTCAACTATTAGAAACTCACAGCTACACACAAGTAGTAGAAAA-GACAGGTATT 465899 Query 41046 AGTAA 41050 ||||| Sbjct 465900 AGTAA 465904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131357905930680