Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_016563.1 Length=156897 Score E Sequences producing significant alignments: (Bits) Value seq8 154 1e-32 seq7 147 2e-30 seq6 141 9e-29 seq16 127 2e-24 seq361 100 3e-16 seq3 91.5 1e-13 >seq8 Length=318055 Score = 154 bits (170), Expect = 1e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 21677 AGTTAAAGCAACAGCTTATACTGCTGACCCTTCCGAAAATGGAGGAACTTATGGTGGACG 21736 |||| ||| ||||| ||||| ||| |||| |||||| || || || ||||| || || Sbjct 28542 AGTTGTAGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCG 28483 Query 21737 AGTACTAACAGCAACTGGATTTGACTTAACAGCAAACCCATCAGCTAAAATTATTGCAGT 21796 ||| |||| |||| || ||| ||||| || || ||| ||||| || || || Sbjct 28482 TGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGT 28423 Query 21797 TGACCCACGAGTAATTCCGTTAGGTTCTAAAGTTCATGTAGAAGGTTACGGAACAGCAAT 21856 |||||| |||||| || ||||| |||||||| ||||||||||||||| ||| || Sbjct 28422 TGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTAT 28363 Query 21857 CGCGAGTGATACTGGTGGTGCAATTAAAGGTAACAGAATCGAT 21899 ||| | ||||||||||||||||||||||||||| | || ||| Sbjct 28362 CGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq7 Length=350003 Score = 147 bits (162), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 21683 AGCAACAGCTTATACTGCTGACCCTTCCGAAAATGGAGGAACTTATGGTGGACGAGTACT 21742 ||| ||||| ||||||||||| || |||||||| || ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGACGCGTTTT 229056 Query 21743 AACAGCAACTGGATTTGACTTAACAGCAAACCC--ATCAGCTAAAATTATTGCAGTTGAC 21800 ||| || | || ||| ||||| ||||| || || | | |||||| ||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATG--AGAATTATCGCAGTTGAC 229114 Query 21801 CCACGAGTAATTCCGTTAGGTTCTAAAGTTCATGTAGAAGGTTACGGAACAGCAATCGCG 21860 || |||||| || ||||| |||||||| |||||||| || ||| ||| ||||| Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 21861 AGTGATACTGGTGGTGCAATTAAAGGTAACAGAATCGATGTGCTTATGCCATCTCACTCT 21920 |||||||||| |||||||||||||||| | || ||||| | ||| || | | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 21921 CAATCAAATAATTGGGGAGTTCGAACAGTAAAAGTAACAATTTTA 21965 || | | ||||||||| | ||| || ||||| | ||||||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq6 Length=382643 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21760 ACTTAACAGCAAACCCATCAGCTAAAATTATTGCAGTTGACCCACGAGTAATTCCGTTAG 21819 |||||||||| || ||| ||| | ||||||||||| ||| | || ||||| |||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 21820 GTTCTAAAGTTCATGTAGAAGGTTACGGAACAGCAATCGCGAGTGATACTGGTGGTGCAA 21879 |||| ||||| || |||||||||||| ||||||||| ||||||||||||| || | Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 21880 TTAAAGGTAACAGAATCGATGTGCTTATGCCATCTCACTCTCAATCAAATAATTGGGGAG 21939 |||||||||| | |||||| || | |||||| | | | ||||| || |||||| Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 21940 TTCGAACAGTAAAAGTAACAATTTTAAACTAGT 21972 | |||||| | ||| | | | |||||||||| Sbjct 339209 GTAAAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 127 bits (140), Expect = 2e-24 Identities = 225/319 (71%), Gaps = 13/319 (4%) Strand=Plus/Plus Query 21660 CAAGGT--AAAACAATTGTAGTTAA-AGCAACAGCTTATACTGCTGACCCTTCCGAAAAT 21716 |||||| |||| |||| || ||| |||||| |||||||| |||||||| || ||||| Sbjct 160169 CAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCATCTGAAAAC 160228 Query 21717 GG--AGGAACTTATGGTGGACGAGTACTAACAGCAACT--GGATTTGACTTAACAGCAAA 21772 || | ||| |||| | ||| | | || | ||| | | ||||| ||||| Sbjct 160229 GGCTATAAACCG--GGTGAAACTGTAAAATCT--AAGTTAGGACATAATTTAACTGCAAA 160284 Query 21773 CCCATCAGCTAAAATTA-TTGCAGTTGACCCACGAGTAATTCCGTTAGGTTCTAAAGTTC 21831 ||| | | |||||| |||| || || ||| || || || |||||||||| || Sbjct 160285 TCCAA-ACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACTGTAT 160343 Query 21832 ATGTAGAAGGTTACGGAACAGCAATCGCGAGTGATACTGGTGGTGCAATTAAAGGTAACA 21891 |||||||||| || ||||||||||| || | ||||||||| ||||||| ||||| | | Sbjct 160344 ATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGGCATA 160403 Query 21892 GAATCGATGTGCTTATGCCATCTCACTCTCAATCAAATAATTGGGGAGTTCGAACAGTAA 21951 || ||| | | |||||| | ||||| | ||| | ||||| ||||||| | Sbjct 160404 TCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACAGTTA 160463 Query 21952 AAGTAACAATTTTAAACTA 21970 |||| | |||||||||||| Sbjct 160464 AAGTTAAAATTTTAAACTA 160482 >seq361 Length=20807 Score = 100 bits (110), Expect = 3e-16 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 21671 AATTGTAGTTAAAGCAACAGCTTATACTGCTGACCCTTCCGAAAATGGAGGAACTTATGG 21730 |||| ||| |||| || || ||||| || || || || ||||| | ||||| Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGG 1113 Query 21731 TGGACGAGTACTAACAGCAACTGGATTTGACTTAACAGCAAACCCATCAGCTAAAATTAT 21790 ||| || ||| |||| |||| || ||| ||||||||||| ||| ||| | || Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 21791 TGCAGTTGACCCACGAGTAATTCCGTTAGGTTCTAAAGTTCATGTAGAAGGTTACGGAAC 21850 ||| ||||| || |||||||||| | || || ||||| |||||||| || ||| Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 21851 AGCAATCGCGAGTGATACTGGTGGTGCAATTAAAGGTAACAGAATCGATGT 21901 ||| || || | || || |||||||| |||||||| || | || ||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGT 1284 >seq3 Length=500241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 240/359 (67%), Gaps = 18/359 (5%) Strand=Plus/Minus Query 494 CCTTCATCTAACATACGGTGAGGGCAATACTTGCCATTACGCTCTTGGTGAGTTTTAACT 553 |||||||| | ||| || || ||||||| ||| ||| | | | || || || || Sbjct 659 CCTTCATCGAGCATTCGATGTGGGCAATGCTTTCCACTCCACGATTTATGTGTACGTACA 600 Query 554 TTAGAAATCGGGATATCGAATCGAACCATTAAGTCAGAGATATGCTCAATAGC---ATTT 610 ||| |||||| |||| |||| | |||||| | || ||| |||| || ||| Sbjct 599 TTACTAATCGGTATATTGAATTGTTTCATTAACTGAGCAATAA---CAATTGCTGCATTA 543 Query 611 AACTCCGCTTTACGGTAACGCTCTCCTCCACTCATAGAGTAACAGATTTCTACACCAATA 670 |||||| || || | || || || || | ||| || || ||||| || || ||| Sbjct 542 TCCTCCGCCTTGTAATATCTATCCCCACCGCTTAGAGAATAGCAAATTTCCACTCCGATA 483 Query 671 GAATGACGGTTACCTCGACCATTACCATCACCCGCGTGCCAAGCATTTCGGTCAAATGGG 730 || | ||| ||||| || ||||||||||| || ||||||||||| || ||||| | Sbjct 482 GATTTACGATTACCATTTCCGTTACCATCACCTGCATGCCAAGCATTACGATCAAACAGA 423 Query 731 ATTACTTGTTGAACTTCAAAGTCATCGACAGCCGTATGGAAAGA---TGTACCTTTAGAG 787 || ||||| |||| |||||| || || ||| || || || | ||| Sbjct 422 ATACCTTGTACTGCTTCTTTGTCATCTACTGCAACATGAAACGACACTGAA---TTA--- 369 Query 788 TTATTGCGAA-CAT-TACGA-ACTTCTGCTGAAGCTGATGCATCGTTATACGTGTTATG 843 ||||| | || ||| ||||| | || | ||||||||||| || ||||| ||||| Sbjct 368 TTATTCCCAATCATATACGATATCTCATTTTCTGCTGATGCATCATTGTACGTATTATG 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501908236545400