Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_017968.1 Length=43786 Score E Sequences producing significant alignments: (Bits) Value seq9 104 7e-18 >seq9 Length=252781 Score = 104 bits (114), Expect = 7e-18 Identities = 203/298 (68%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 43069 CGGTTCTAAAAATTGAATACTATCAGCAATAACTTCCGTAACATATACACGTTGACCTTC 43128 ||| ||||||||||| | || || |||| |||||| || || |||||||||| ||| || Sbjct 22520 CGGCTCTAAAAATTGCACGCTTTCCGCAAGAACTTCTGTTACGTATACACGTTTACCATC 22461 Query 43129 CTTATTTTCATAATTCCGCGTTTGTAACCTACCATCTACGCCCGTCAACGATCCTTT--- 43185 | || ||||| || ||||| | | ||||||||||| | || ||||| Sbjct 22460 TTGTCCCTCGTAATTACGAGTTTGAAGACGTCCATCTACGCCTGCTAAGCTACCTTTTTT 22401 Query 43186 -AGATAGGTATTTATTAACGTTCTCTGCTTGTTTTTTAAATACGATGATATTAATAAAGT 43244 | ||| |||| | ||||| ||||||||||| ||| | ||||||||||| Sbjct 22400 CAAATA---ATTTGCT-ACGTTTTCTGCTTGTTTACGCCATATTACACAATTAATAAAGT 22345 Query 43245 CTGCCTCGCGCTCTCCTTGTGCATTCGTAAATGTGCGGTTAACTGCTAATGTGAATGATG 43304 | || || ||||| ||||| ||| | ||||| ||| || || ||||| || || | | Sbjct 22344 CAGCTTCACGCTCACCTTGCTGATTGGCAAATGCGCGATTCACAGCTAACGTAAAAGTAG 22285 Query 43305 CTACACTCACACCTGAAGGAGTGGTTCTGTATTCCGGATCTTTCGTTAAACGACCTAC 43362 |||| ||||| || ||| | | || || || || ||||||||||| || Sbjct 22284 CTACTGCGACACCATTGGGCGTGTAACGTAAGTCAGGGTCCTTAGTTAAACGACCAAC 22227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139984548101320