Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_017976.1 Length=41164 Score E Sequences producing significant alignments: (Bits) Value seq42 136 1e-27 >seq42 Length=115759 Score = 136 bits (150), Expect = 1e-27 Identities = 359/537 (67%), Gaps = 16/537 (3%) Strand=Plus/Minus Query 30969 CAAAGTTTGATCCTGATGTGAATTTAATGAGTACGGACGAAATAAGTAAGCTATGTTTGC 31028 ||||||||||||| |||| ||||| |||||||| || ||||| || || || ||||| Sbjct 40520 CAAAGTTTGATCCGAATGTAAATTTGATGAGTACCGATGAAATGAGCAAATTAGCTTTGC 40461 Query 31029 AGCTACCTAGCGGGGAATTACAACGTAAGTATGCAGACGAATTGAATGTAAAACGGAAAG 31088 | | ||| || || ||||| || |||||||| | ||||| ||||||| ||||| Sbjct 40460 AAATGCCTGTAAAAGAGTTGCAACGAAAATATGCAGATGCATTGAGTGTAAAAAAGAAAG 40401 Query 31089 TTGAAACCGACATACCTTCAGCAGTT---CGGAACGAGAA--GAACCTATTAATCGGTCA 31143 |||||| || |||| |||| || ||| | ||||| ||| |||| | || || Sbjct 40400 TTGAAATTGAGATAC---CAGCGATTATGCGGGATGAGAAAGGAA--TATTTTTAGGACA 40346 Query 31144 TGCAGAATATAAAGATAGTAAAATACCTATCTACCTGCCATGCGACCAAAAGGAAGAGTT 31203 | | |||| |||||| |||||||| ||||| ||||| || | || | || Sbjct 40345 TTCGGAATTGAAAGATCAAAAAATACCAATCTATATGCCAATAGATAATCCAGATAATTT 40286 Query 31204 TTATAGTGGCTATACGTTCATAGGTAAGCAAGGAGCAGGAAAGGATAATGCGATACAGAA 31263 |||||| || || || ||||| || || || || || |||| || || |||| Sbjct 40285 TTATAGAGGTTACGTCTTTATAGGAGGACAGGGGGCTGGTAAAGATACAGCAATTAAGAA 40226 Query 31264 CTTTGTTTACCATGGTGCTATGCATCAAAATATCTCGTTTATTATTCCCGACTGGATATG 31323 |||||| | || || | || || || ||||| || || || || | || Sbjct 40225 TTTTGTTATTGAGGGAAATACAAAACATAAGATTAGTTTTATCATACCAGA-TGCAATTG 40167 Query 31324 CCAAAG-CGGACACAATGGTATGGCGGACGGTATACGTGATTTATTGCCACCTGATAAGA 31382 ||| || || ||||| ||||| || |||||| ||| ||||| || || | Sbjct 40166 TAGAAGAAGGTGGGCGGGGGATGGCAGACGGGATTCGTGATGCATTACCACCAGAAAACA 40107 Query 31383 TAATCGACCTCGACCT-ATCGAATGAAGACCATATCATCCCTATGGACTTGACTGAGGTT 31441 | || || || || | | ||| | || ||||| ||| | || || || || || Sbjct 40106 TTATTGATCTGGATTTAAACGACAG-TGATTATATCCCACCTCTAGATTTAACAGAAGTA 40048 Query 31442 A-TACAGAAGTTAGGACGCAAAGGGGCATCAAGGTTCGGGGATGAGATGATTGATTT 31497 | |||| ||| |||| || || || || ||||| || | |||||| ||||||||||| Sbjct 40047 ATTACA-AAGCTAGGGCGGAACGGTGCTTCAAGATTTGCGGATGAAATGATTGATTT 39992 Score = 89.7 bits (98), Expect = 1e-13 Identities = 186/275 (68%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 29703 ATTAGGTCATCGTGGTAAGGCGATAGAGGTGTTACTGTCTGTAAGTTGTGGATATATTTT 29762 ||| ||||| ||| ||||| ||||| | ||| | || | ||||||| ||||| || Sbjct 42137 ATTGGGTCACCGTACAAAGGCAATAGAAATTTTAATTGGTGCATGTTGTGGGTATATCTT 42078 Query 29763 ATGCAGACATAGCGTGGATATTAGAGATTTCTTACA---AACTATATAGGAGGGGATAGT 29819 |||||| || || || ||||| || ||| | || | | |||||||| | Sbjct 42077 GGCTAGACATGCGGTTGACATAAGAGACTTTTTAAAGGGAATTTAAAAGGAGGGGTCCTT 42018 Query 29820 ATGAAATTCTTATTCGATGGCTCTAAATGGGTATCAGCTA---CAGCA---TATATTGGT 29873 |||||||| | || || || ||| | | | |||| |||| |||||||| Sbjct 42017 GTGAAATTCATTTTAGAAGGTGGAAAAATGATTGCGGCTAATACAGCTGGGTATATTGGA 41958 Query 29874 GAGAAGGCAAAAGAAGGCAGTTTCATGGATCACTTGAATAACTTCAGTGATTCAATCGTA 29933 || ||||||||||| || ||| | ||||| || ||||| || |||||| | || ||| Sbjct 41957 GAAAAGGCAAAAGAGGGTTCTTTTTTAGATCAATTAAATAATTTTAGTGATGCTATTGTA 41898 Query 29934 TCAAAGGAAATGGAAGTTATCTTTAAACCAGCTGG 29968 |||||||||||| || || || |||| ||| Sbjct 41897 GGGAAGGAAATGGAATGGATTTTCAAGCCAGTTGG 41863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131594690619340