Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_018277.1 Length=42784 Score E Sequences producing significant alignments: (Bits) Value seq7 778 0.0 seq4 244 3e-60 seq2 96.9 9e-16 >seq7 Length=350003 Score = 778 bits (862), Expect = 0.0 Identities = 711/895 (79%), Gaps = 22/895 (2%) Strand=Plus/Plus Query 20578 AAGGAGAGGATAAATAATGGGTTACACTGTAGATATTTCAAAATGGAATGGTGATATTAA 20637 ||||||| | |||||||||||||| | ||| |||||||| ||||||||||| || ||||| Sbjct 348709 AAGGAGATGTTAAATAATGGGTTATATTGTGGATATTTCGAAATGGAATGGCGACATTAA 348768 Query 20638 TTGGCCCGTGGCAAAACAATACATTGATTTCATTATCGCTCGTGTACAAGATGGTTCGAA 20697 ||| | ||| || | | | |||||| | || || ||||| ||||||||||| || Sbjct 348769 CTGGGATATCGCAGCACCACAATTGGATTTCGTAATTGCACGTGTGCAAGATGGTTCAAA 348828 Query 20698 TTATGTAGATCCATTATATAAGGGGTATGTACAAGCTATGAAGCAACATGG--TATTCCT 20755 ||||||||||| |||||||| ||||||||||| ||||| | || || |||||| Sbjct 348829 CTATGTAGATCCTTTATATAAAAATTATGTACAAGCAATGAA--AGCACGGAATATTCCG 348886 Query 20756 TTTGGTAACTATGCATTTTGTCGTTTCGTTTCTGAGAATGACGCACGTGTAGAAGCTCGA 20815 |||||||| ||||| || |||||||||||||| | | || ||||| ||||||| || Sbjct 348887 TTTGGTAATTATGCGTTCTGTCGTTTCGTTTCAGTAGAGGATGCACGGATAGAAGCAAGA 348946 Query 20816 GACTTCTGGAATCGTGGAGACAAGAGTGCAACAGTCTGGGTGGCTGATGTGGAAGTAAAA 20875 ||||| ||||| ||||| || || | ||||||||| ||||| ||||| || ||||||| | Sbjct 348947 GACTTTTGGAACCGTGGTGATAAAAATGCAACAGTTTGGGTAGCTGACGTAGAAGTAAGA 349006 Query 20876 ACAATGGATGATATGAGAGCCGGCACGCAAGCGTTTATCGATGAACTACGCCGATTAGGT 20935 |||||| | ||||||||||| || | ||||| ||||| |||||| ||||| ||||||| Sbjct 349007 ACAATGAACGATATGAGAGCGGGTGCACAAGCTTTTATTGATGAATTACGCAGATTAGGA 349066 Query 20936 GCTCAAAAAGTCGGTTTATATGTTGGCCATCATATGTATGCTCCATTCGGAATGGCAAAT 20995 ||| | || | ||||||||| ||| |||||||||||||||||||| |||||||||||| Sbjct 349067 GCTAAGAAGGCTGGTTTATATATTGCTCATCATATGTATGCTCCATTTGGAATGGCAAAT 349126 Query 20996 GTAAAATCTGACTTTGTATGGATTCCTCGATATGGCGGGAATAGACCAGCTTATCCATGT 21055 | || ||||| ||||||||||||||||| || || || || | ||| || ||| ||||| Sbjct 349127 TTCAATTCTGATTTTGTATGGATTCCTCGTTACGGTGGTAACAAACCGGCGTATTCATGT 349186 Query 21056 GATATTTGGCAATACACTGAAACAGGAAGTGTTCCTGGTATCGGAAAGTGTGATTTAAAC 21115 ||||||||||||||||| |||||||| | ||| |||||||||| |||||||||||||| Sbjct 349187 GATATTTGGCAATACACAGAAACAGGGAATGTGGCTGGTATCGGCAAGTGTGATTTAAAT 349246 Query 21116 AAATTAATTGGAAGCAAGTCGTTAGATTGGTTTACAAAT-AAATCGT-----------AT 21163 || | ||||||| ||| |||||| ||||||||||||| ||| || | Sbjct 349247 AAGCTGATTGGAAATAAGCCGTTAGCTTGGTTTACAAATCCAATTGTTGAGCCGATAAAA 349306 Query 21164 AAACAAGAAGGAGTGGAGATTATCGTGAACAAACATAATAAGGTGATTACTTATGAATTT 21223 ||||||||||| || | ||||| ||||| ||| |||| || || |||||||||||||| Sbjct 349307 AAACAAGAAGGGGTTGGAATTATAGTGAATAAATATAACAAAGTAGTTACTTATGAATTT 349366 Query 21224 GGTGTAAATTTAATTCCAGAAATGATTCAAATGATGGATACGCTTGGATACACTTCAAAA 21283 |||||||||||| |||| || ||||||||||||||||||| ||||||||| ||||| ||| Sbjct 349367 GGTGTAAATTTAGTTCCTGACATGATTCAAATGATGGATAAGCTTGGATATACTTCTAAA 349426 Query 21284 ATTGTTTCTCGTGGAGATCGTCAGGGGCTTGTTTATTTTGAGTCGGATTATCGTCAAGGT 21343 || | |||||||||||| || |||||||| ||||| || | |||||||||||||| Sbjct 349427 ATAATATCTCGTGGAGATAACCAAGGGCTTGTGTATTTCGAAACAGATTATCGTCAAGGG 349486 Query 21344 AGCGAGCTAGATAAAGCAACAGCGTGGTTAGATGCTAAAGGACTTAAATACTTTTATACA 21403 | || || || |||||||| || ||||||||| | |||||| ||||||| ||||||||| Sbjct 349487 AATGAACTGGACAAAGCAACTGCTTGGTTAGATACGAAAGGAATTAAATATTTTTATACA 349546 Query 21404 AAAGAATAGTTTTATGAACAAAAATTAGAGCCGTCAAACGACGGCCCTTTTATTT 21458 ||||| |||||| | || |||| |||||||| ||||| |||||||| Sbjct 349547 AAAGAGTAGTTTGCTAAATAAAA-----AGCCGTCATGTGACGG-TTTTTTATTT 349595 Score = 91.5 bits (100), Expect = 4e-14 Identities = 88/110 (80%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 37671 AACATAAAAGAGCAGCTAGCAAAAGCTAACTGCTCATCTCCAAGGGGGAACAAGGAGAAA 37730 || ||||||||||||||||||||||| |||||||| |||| ||| ||| | ||||||| Sbjct 297615 AAAATAAAAGAGCAGCTAGCAAAAGCCAACTGCTCCTCTCTCAGGAGGA--ATGGAGAAA 297672 Query 37731 GTAACTTAATGGGTTGTCTACAGTATTGACGGAATATTGAGTTTTATTCA 37780 || | || || |||| ||||||||||||| || |||||||| ||| Sbjct 297673 -TACAATCAT--ATTATCTATAGTATTGACGGAACATAGAGTTTTAATCA 297719 >seq4 Length=425142 Score = 244 bits (270), Expect = 3e-60 Identities = 390/558 (70%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 20594 ATGGGTTACACTGTAGATATTTCAAAATGGAATGGTGATATTAATTGGCCCGTGGCAAAA 20653 ||||| || | |||||||||||||||||||||||| |||||||||| | ||| | Sbjct 333745 ATGGGGTATATTGTAGATATTTCAAAATGGAATGGAACTATTAATTGGGATATTGCAGCA 333804 Query 20654 CAATACATTGATTTCATTATCGCTCGTGTACAAGATGGTTCGAATTATGTAGATCCATTA 20713 | | ||||| | || ||| | || |||||||| || ||| || ||| | Sbjct 333805 TCTCAGTTAGATTTAGTGATTGCTAGAGTTCAAGATGGCTCTAATACGGTGGATTTTATG 333864 Query 20714 TATAAGGGGTATGTACAAGCTATGAAGCAACATGGTATTCCTTTTGGTAACTATGCATTT 20773 ||| | ||||| | ||||| | ||| |||| || || ||||| ||||| ||| Sbjct 333865 TATCAAAATTATGTTAGTGAAATGAAAAAGCATAGTATCCCATTCGGTAATTATGCTTTT 333924 Query 20774 TGTCGTTTCGTTTCTGAGAATGACGCACGTGTAGAAGCTCGAGACTTCTGGAATCGTGGA 20833 || ||||| | ||| ||| ||| ||| || | ||| || ||||||||||| Sbjct 333925 TGCCGTTTTATATCTATTGCTGATGCAAAGAAAGAGGCACAAGATTTTTGGAATCGTGGT 333984 Query 20834 GACAAGAGTGCAACAGTCTGGGTGGCTGATGTGGAAGTAAAAACAATGGATGATATGAGA 20893 || | ||| | | ||||| || || | ||||| |||| |||| |||||| | Sbjct 333985 GATCAATCTGCTAAGTTTTGGGTAGCGGACATAGAAGTTCAAACGATGGTAGATATGCAA 334044 Query 20894 GCCGGCACGCAAGCGTTTATCGATGAACTACGCCGATTAGGTGCTCAAAAAGTCGGTTTA 20953 | ||| || || || ||||| |||||| ||||||| ||||||| ||||||| || ||| Sbjct 334045 GGCGGGACACAGGCATTTATTGATGAATTACGCCGTTTAGGTGTGGAAAAAGTAGGATTA 334104 Query 20954 TATGTTGGCCATCATATGTATGCTCCATTCGGA--ATGGCAAATGTAAAATCTGACTTTG 21011 || || || ||||| | |||| |||| ||| ||| ||| | || |||| || Sbjct 334105 TACGTAGGACATCACACGTATTTATCATTTGGAGCATG--TAATATTGAAGCTGATTTCA 334162 Query 21012 TATGGATTCCTCGATATGGCGGGAATAGACCAGCTTATCCATGTGATATTTGGCAATACA 21071 ||||||| ||||| ||||| ||||||| |||| |||||||| ||||| |||||||| | Sbjct 334163 TATGGATCCCTCGTTATGGAGGGAATAAGTCAGCATATCCATGCGATATGTGGCAATATA 334222 Query 21072 CTGAAACAGGAAGTGTTCCTGGTATCGGAAAGTGTGATTTAAACAAATTAATTGGAAGCA 21131 | || |||| | |||||||||||| || || |||||| | || |||| | |||| | Sbjct 334223 CGGATTCAGGGAATGTTCCTGGTATTGGGAAATGTGATCTGAATCGATTAGTAGGAAATA 334282 Query 21132 AGTCGTTAGATTGGTTTA 21149 |||| | |||||||| Sbjct 334283 AGTCACTTTCTTGGTTTA 334300 Score = 114 bits (126), Expect = 4e-21 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 41133 ATAGCAATTATCGTAGGCGCTTCCGTGATCTGGG-GGCGTCTTGTTTGTTGTTAAGGAAA 41191 ||||||||||| | ||||||| ||||| ||||| |||||||||||||| |||||||||| Sbjct 184620 ATAGCAATTATAGCAGGCGCTGCCGTGTTCTGGTTGGCGTCTTGTTTGTCGTTAAGGAAA 184679 Query 41192 GATAAGCGCAAACGTGTTGCATTTTAGAAAACAAA-TGGACACAA 41235 | | ||| |||||||||||| ||||| |||||||| | |||||| Sbjct 184680 GGTCAGCCCAAACGTGTTGCGTTTTACAAAACAAACTCAACACAA 184724 >seq2 Length=633208 Score = 96.9 bits (106), Expect = 9e-16 Identities = 70/79 (89%), Gaps = 4/79 (5%) Strand=Plus/Plus Query 40190 ATTCACATAGA--CATATCCCCTTATGTTCGAACGTGAA--TTTCTCCCATCCCCTTTAA 40245 ||||||||| | ||||| ||| | |||| ||||||||| ||||||||||||||||||| Sbjct 47714 ATTCACATACAAACATATACCCCTTTGTTTGAACGTGAAAATTTCTCCCATCCCCTTTAA 47773 Query 40246 TATTTTTATAAGCCGTAAA 40264 ||||||||||||||||||| Sbjct 47774 TATTTTTATAAGCCGTAAA 47792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136778355425140