Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_018856.1 Length=153962 Score E Sequences producing significant alignments: (Bits) Value seq6 183 3e-41 seq7 161 1e-34 seq8 154 1e-32 seq16 138 1e-27 seq361 129 6e-25 >seq6 Length=382643 Score = 183 bits (202), Expect = 3e-41 Identities = 220/297 (74%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 20838 GTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTA 20897 || || ||||||||||| |||||||| ||| || |||||| || | || | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 20898 GTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTT 20957 || ||| |||| ||| ||| |||||||| ||||| | | ||| |||| |||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 20958 GACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCGATG 21017 || ||| | || |||||||||||||| ||||||| || ||||||||||||| || || Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 21018 GCACTAGATACTGGTGGAGCAATCAAAGGTAATCGTATCGATGTATTAATGCCTAATAAC 21077 || |||||||||||||| || ||||||||| ||||| || |||||||| ||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATA-- 339184 Query 21078 AAAGT--ATCGAATGATTGGGGACGAAAAACAGTTAATGTTACAATCTTAAACTAGT 21132 || || ||| | | |||||||| |||||||||| |||| | | |||||||||| Sbjct 339185 AAGGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq7 Length=350003 Score = 161 bits (178), Expect = 1e-34 Identities = 218/298 (73%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 20831 AATTA-CAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACG 20889 ||||| | || || || ||||| ||||| || || ||| || |||||| ||||| | Sbjct 228987 AATTAACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATG 229043 Query 20890 GTGGAGTAGTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAA 20949 ||||| ||| ||| || | || ||||||| |||||||| | | | | | Sbjct 229044 GTGGACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTA 229103 Query 20950 TCGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAG 21009 ||||||||||||| |||||| |||||||| |||||||||| |||||||| || |||| Sbjct 229104 TCGCAGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAG 229163 Query 21010 AGGCGATGGCACTAGATACTGGTGGAGCAATCAAAGGTAATCGTATCGATGTATTAATGC 21069 | ||||| || |||||||| | ||||| |||||||||||||| ||||| |||||| Sbjct 229164 AAGCGATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGG 229223 Query 21070 CTAATAACAAAGTATCG-AATG-ATTGGGGACGAAAAACAGTTAATGTTACAATCTTA 21125 | | | |||||| | ||| |||||||| || |||| ||||| || | ||| ||| Sbjct 229224 GT--TCAAAAAGTAAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq8 Length=318055 Score = 154 bits (170), Expect = 1e-32 Identities = 220/302 (73%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 20835 ACAGTGGTCGCAACAGCTTATACAGCAGACCC-AGCAGAGAATGGTGGTACATACGGTGG 20893 ||||| || || ||||| |||||||| |||| ||| || || ||||| ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 20894 AGTAGTTAAAACAGCAACAGGATTCA--ATTTAACAGCAAATCCTAGCGCAAAAGTAATC 20951 || ||| |||| || ||| ||||||| || ||||| | ||| | ||| Sbjct 28485 CCGTGTATTAACTGCAATGGG--TCATGATTTAACTGCGAATCCAAATATGAAAATGATC 28428 Query 20952 GCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAG 21011 || |||||||| |||||| |||||||| |||||||||| ||||||||||||||||| Sbjct 28427 GCTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAA 28368 Query 21012 GCGATGGCACTAGATACTGGTGGAGCAATCAAAGGTAATCGTATCGATGTATTAAT---G 21068 || || || |||||||||||| ||||| |||||||| ||||| ||| | ||| | Sbjct 28367 GCTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTACTTGGA 28308 Query 21069 CCTAATAACAAAGTATCGAATGATTGGGGACGAAAAACAGTTAATGTTACAATCTTAAAC 21128 | ||| | | || || | |||||||| ||||| ||||| || | ||| ||||| Sbjct 28307 TCAGATAGCGCTG-CTCAAA--AATGGGGACGCAAAACTGTTAAAGTGAAAATTTTAAAA 28251 Query 21129 TA 21130 || Sbjct 28250 TA 28249 >seq16 Length=199848 Score = 138 bits (152), Expect = 1e-27 Identities = 205/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 20844 GCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTAGTTAAA 20903 ||||| ||||||||||| |||||| | || || || || | |||| | || ||| Sbjct 160196 GCAACCGCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAA 160255 Query 20904 ACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTTGACCCA 20963 | |||| |||||||| |||||||| | | ||| |||| || || || ||| Sbjct 160256 TCTAAGTTAGGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCA 160315 Query 20964 CGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCGATGGCACTA 21023 || || ||||||||||||| ||||| |||||||| || ||| || || || | Sbjct 160316 TCTGTTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGA 160375 Query 21024 GATACTGGTGGAGCAATCAAAGGTAATCGTATCGATGTATTAATGCCTAAT--AACAAAG 21081 ||||||||| | ||||| ||||| || || ||| |||||||||| ||| | | | Sbjct 160376 GATACTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCA- 160434 Query 21082 TATCGAATGATTGGGGACGAAAAACAGTTAATGTTACAATCTTAAACTA 21130 | | ||||| ||||| ||| ||||||||| |||| ||| |||||||| Sbjct 160435 -AGCTAATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq361 Length=20807 Score = 129 bits (142), Expect = 6e-25 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 20831 AATTACAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGG 20890 ||||||||| | || || || ||||||||||| || ||||||||| | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGG 1113 Query 20891 TGGAGTAGTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAAT 20950 ||| || ||| |||| || |||||||||||||||| | |||||||| Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 20951 CGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGA 21010 || ||||| || ||||||||| | || || ||||||| |||||||| || ||||| Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 21011 GGCGATGGCACTAGATACTGGTGGAGCAATCAAAGGTAATCGTATCGATGTATTA 21065 ||||| || ||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492516875788400