Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_018857.1 Length=158305 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq8 125 7e-24 seq16 122 9e-23 seq7 116 4e-21 seq361 82.4 8e-11 >seq6 Length=382643 Score = 132 bits (146), Expect = 5e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 141721 ACTAGTTTAAGATTGTAACTTTTACTGTTTTAACGCCCCAGTTGCTAGATTGTGATTGGT 141780 |||||||||| | | ||||| | ||||||||| |||||| | || ||| || | Sbjct 339241 ACTAGTTTAATACTTTAACTGTAACTGTTTTACGTCCCCAGCTACTTGATGAACCTTTAT 339182 Query 141781 TAGGCATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTG 141840 ||||||| |||||||| ||| ||||||||||||||||||||||| || |||| Sbjct 339181 CTGGCATTAAAACGTCGATTTTATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTG 339122 Query 141841 CTGTTCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGTGGGTCAACTG 141900 || |||||||||||| || || || |||||||||||||| || | ||| ||||||| Sbjct 339121 CTACTCCGTAACCTTCAACCCATACTTTTGAACCTAATGGAATGACACTTGGATCAACTG 339062 Query 141901 CGATAATCTTAGCTGATGGATTTGCTGTTAA 141931 | || | || |||||| |||||||| Sbjct 339061 CAATTAGTTTCATGTTTGGATTAGCTGTTAA 339031 >seq8 Length=318055 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 141795 TCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGTTCCGTAACCT 141854 || ||||| || |||||||| || |||||||||||| || || ||| |||||||||| Sbjct 28321 TCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACCT 28380 Query 141855 TCTACGTGAACCTTAGAACCTAATGGAATCACTCGTGGGTCAACTGCGATAATCTTAGCT 141914 ||||| || ||||| |||||||| || ||| |||||||| ||||| || || Sbjct 28381 TCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCATA 28440 Query 141915 GATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCACCGTAAGTGCCT 141974 |||||| || |||||||| || | || |||| || || || || || ||||| Sbjct 28441 TTTGGATTCGCAGTTAAATCATGACCCATTGCAGTTAATACACGGCCGCCATATGTGCCA 28500 Query 141975 CCGTTCTCGGATGGGTCAGCAGTGTAAGCTGTTGCTTTAACT 142016 ||||| ||| |||| ||| || || ||||| ||| |||| Sbjct 28501 CCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCTACAACT 28542 >seq16 Length=199848 Score = 122 bits (134), Expect = 9e-23 Identities = 224/320 (70%), Gaps = 15/320 (5%) Strand=Plus/Minus Query 141723 TAGTTTAAGATTGTAACTTTTACTGTTTTAACGCCCCAGTTGCTAGATTGTGATTGGTTA 141782 |||||||| ||| ||||||| |||||| | ||||||| ||| ||| | | || Sbjct 160482 TAGTTTAAAATTTTAACTTTAACTGTTCTTCTACCCCAGTCATTAGCTTGAGCTGAATTT 160423 Query 141783 GGCATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCT 141842 ||||||| || || || || ||||| || || | |||||||||| ||||||||| Sbjct 160422 GGCATTAATAGATCAATGATATGCCCTTTTATTGCACTACCAGTATCTCCAGCAATTGCT 160363 Query 141843 GTTCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGTGGGTCAACTGCG 141902 ||||| || |||||||| | || ||||||||||||| || || ||| || || || Sbjct 160362 GTTCCATATCCTTCTACATATACAGTAGAACCTAATGGGATAACAGATGGATCTACAGCA 160303 Query 141903 A-TAATCTTAGCTGATGGATTTGCTGTTAAATCGAATCCT---GTAGCTGTTAGAACTCG 141958 | |||| | | | ||||||||| ||||||| |||| ||| | ||| | | Sbjct 160302 ATTAATTTCATGT-TTGGATTTGCAGTTAAATTATGTCCTAACTTAGATTTTACAGTT-- 160246 Query 141959 TCCACCG--TAAGTGCCTCCGTTCTCGGATGGGTCAGCAGTGTAAGCTGTTGCT-TTAAC 142015 || ||| | | | ||||| || ||||||||||| || ||||| |||||| ||| Sbjct 160245 TCACCCGGTTTATAG---CCGTTTTCAGATGGGTCAGCTGTATAAGCGGTTGCTGTTACG 160189 Query 142016 TACGATTGTTTT--ACCTTG 142033 || ||| |||| |||||| Sbjct 160188 TAAAATTCTTTTCCACCTTG 160169 >seq7 Length=350003 Score = 116 bits (128), Expect = 4e-21 Identities = 164/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 141785 CATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGT 141844 ||||| || || |||||||| |||||||| || | |||||||| || || ||| Sbjct 229222 CATTAAAACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTC 229163 Query 141845 TCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGTGGGTCAACTGCGAT 141904 ||| || |||||||| || ||||| |||||||| || ||| |||||||||||||| Sbjct 229162 TCCATAGCCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGAT 229103 Query 141905 AA-TCTTAGCTGATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCAC 141963 || ||| | | |||||||| |||||||| || | || |||| ||| ||||||| Sbjct 229102 AATTCTCATAT-TCGGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCAC 229044 Query 141964 CGTAAGTGCCTCCGTTCTCGGATGGGTCAGCAGTGTAAGCTGTTGCT 142010 | || || || || || ||| |||||||| || ||||| ||| Sbjct 229043 CATATGT---ACCATTTTCACTTGGATCAGCAGTATACGCTGTCGCT 229000 >seq361 Length=20807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 141788 TAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGTTCC 141847 || ||| || ||||||||||||||||| || ||||| || ||| ||||| ||| ||| Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 141848 GTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGTGGGTCAACTGCGATAAT 141907 || |||||||| || || || || | ||||| ||| || ||||| || || | Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 141908 CTTAGCTGATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCACCGTA 141967 || |||||||||||||||||| || | || |||| || || ||||| || Sbjct 1168 TTTCATATTTGGATTTGCTGTTAAATCATGCCCCATTGCAGTTAATACACGACCACCATA 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506413529883000