Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq8 156 4e-33 seq7 132 5e-26 seq6 105 7e-18 seq16 93.3 4e-14 >seq8 Length=318055 Score = 156 bits (172), Expect = 4e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142642 TCAATACGGTTACCTTTGATTGCGCCACCAGTATCTAGAGCCATTGCTTCTCCGTAGCCT 142701 ||||||||||||||||| ||||| |||||||||||| ||| || ||||||||||| ||| Sbjct 28321 TCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACCT 28380 Query 142702 TCTACATATACTCTAGAACCTAAGGGAATTACTCGTGGGTCTACAGCAATAACTCGTGCG 142761 ||||| ||||| |||| ||||| || |||||| ||||| ||||| || | | Sbjct 28381 TCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCATA 28440 Query 142762 TTTGGATTCTTACTTAAGTTAAATCCAGTCGCTGTTAATACTTGTCCACCGTATGTACCA 142821 ||||||||| | |||| | | || | || |||||||| | || || ||||| ||| Sbjct 28441 TTTGGATTCGCAGTTAAATCATGACCCATTGCAGTTAATACACGGCCGCCATATGTGCCA 28500 Query 142822 CCATTTTCACTTGGATGTGGTGTATAAGCAGTAGCT 142857 || ||||| || || || | |||||| || |||||| Sbjct 28501 CCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCT 28536 >seq7 Length=350003 Score = 132 bits (146), Expect = 5e-26 Identities = 161/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 142639 ACGTCAATACGGTTACCTTTGATTGCGCCACCAGTATCTAGAGCCATTGCTTCTCCGTAG 142698 || |||||||| |||||||| ||||| | |||||||| ||| || |||||||| ||| Sbjct 229215 ACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCCATAG 229156 Query 142699 CCTTCTACATATACTCTAGAACCTAAGGGAATTACTCGTGGGTCTACAGCAATAACTCGT 142758 |||||||| ||||| |||| ||||| || |||||| ||||| || || |||| || Sbjct 229155 CCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAATTCTC 229096 Query 142759 GCGTTTGGATTCTTACTTAAGTTAAATCCAGTCGCTGTTAATACTTGTCCACCGTATGTA 142818 || ||||| |||| | | || |||| ||||| || ||||||| ||||| Sbjct 229095 ATATTCGGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCACCATATGT- 229037 Query 142819 CCACCATTTTCACTTGGATGTGGTGTATAAGCAGTAGCT 142857 ||||||||||||||||| | ||||| || || ||| Sbjct 229036 --ACCATTTTCACTTGGATCAGCAGTATACGCTGTCGCT 229000 Score = 114 bits (126), Expect = 1e-20 Identities = 315/481 (65%), Gaps = 4/481 (1%) Strand=Plus/Plus Query 11229 ATCGTACAAGGTGCTAACTACGGTAGCAGAAAAGAACACGTTATGGATCGCCAGGTTAAA 11288 || || ||||||||||| | || | | |||||||||||| | ||| | || |||||| Sbjct 347583 ATTGTTCAAGGTGCTAATTTTGGGAATCGGAAAGAACACGTTTTAGATAGGCAAGTTAAA 347642 Query 11289 GATGCTTTAATTAGCAAGCTTCGTAGTCTTGGTCACACAGTTTATGACTGCACAGACGAA 11348 |||||| | | ||| | | || || ||||| ||||||||| || ||||| Sbjct 347643 GATGCTGTGGCGACTAAGTTAAGATCCCTAGGACACACGGTTTATGACGATACGGACGAG 347702 Query 11349 ACAGGTTCTACACAAAGCGCTAACCTACGTAACATCGTAGCGAAATGTAATGCTCATCGA 11408 ||| | || ||| || || ||| ||| | ||| | ||| | ||| Sbjct 347703 GTAGGGGCAACTCAATCACAAAATTTAAATAATATCATTCGGAATAGCAATTCCCATGCT 347762 Query 11409 GTAGACTTAGACATTTCATTACACTTAAATGCGTACAACGGTTCTGCTAACGGAGTAGAA 11468 || || |||| ||||| || || | ||||| | || || | || || || Sbjct 347763 GTGGATTTAGTTATTTCTTTTCATCTTAATGCAAGTGATGGAAATGGACAGGGTGTTGAG 347822 Query 11469 GTTTGCTACTACGACCAACAAGCTTTAGCTGCTAAAGTGTCTAAACAGCTTTCTGAAGAC 11528 |||| || || || || ||| ||| || |||||| | || || || | |||| Sbjct 347823 GTTTTGTATTATGATCAGAAAGATTTGGCGGCTAAAATCTCAGCTCAACTAGCAAAAGAT 347882 Query 11529 ATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGACCTTTAC--GTATTAAATAGCA 11586 || |||||| | | || || || |||| ||||| || |||| ||||||||| | | Sbjct 347883 ATTGGATGGCGTGATCGAGGTGCGAAACAGCGTACGGA--TTTAGCGGTATTAAATGGGA 347940 Query 11587 CATCTGCACCTGCTATCTTAATCGAGCTTGGTTTCATCGATAATGAAAGCGACATGGCTA 11646 | ||||||||||| | || || | || || || || |||||| || ||||| | Sbjct 347941 CGAAAGCACCTGCTATTCTTATAGAATTAGGATTTATTGACAATGAATCTGATATGGCAA 348000 Query 11647 AATGGAATGTAGATAAAATCGCAGATTCTATCTGCTACGCTATCACAGGACAACGTGCAG 11706 |||||||||| ||||||||||| ||||| | | ||| | ||||||||| || || Sbjct 348001 AATGGAATGTTGATAAAATCGCTAATTCTGTTGTATTTGCTCTTACAGGACAAACTGGAG 348060 Query 11707 G 11707 | Sbjct 348061 G 348061 >seq6 Length=382643 Score = 105 bits (116), Expect = 7e-18 Identities = 197/288 (68%), Gaps = 10/288 (3%) Strand=Plus/Minus Query 142575 TAATACTGTAATCTTAACTTGCTTACGTCCCCA-----TGCATTAGCCTGGGCATCTGTC 142629 ||||||| ||| ||||| ||||||||||| | || | ||| ||||| | Sbjct 339234 TAATACTTTAACTGTAACTGTTTTACGTCCCCAGCTACTTGATGAACCTTT--ATCTGGC 339177 Query 142630 GGTAAAAGTACGTCAATACGGTTACCTTTGATTGCGCCACCAGTATCTAGAGCCATTGCT 142689 ||||| |||| || |||||||| || || ||||||||||| ||| |||||| Sbjct 339176 ATTAAAA---CGTCGATTTTATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTGCT 339120 Query 142690 TCTCCGTAGCCTTCTACATATACTCTAGAACCTAAGGGAATTACTCGTGGGTCTACAGCA 142749 ||||||| ||||| || ||||| | |||||||| ||||| || | ||| || || ||| Sbjct 339119 ACTCCGTAACCTTCAACCCATACTTTTGAACCTAATGGAATGACACTTGGATCAACTGCA 339060 Query 142750 ATAACTCGTGCGTTTGGATTCTTACTTAAGTTAAATCCAGTCGCTGTTAATACTTGTCCA 142809 || | | ||||||||| ||||||| || |||| | |||||| | Sbjct 339059 ATTAGTTTCATGTTTGGATTAGCTGTTAAGTTGTGGCCTAAAGCTGATTTTACTTGGTCG 339000 Query 142810 CCGTATGTACCACCATTTTCACTTGGATGTGGTGTATAAGCAGTAGCT 142857 || | || |||||||||| ||||| || ||| ||||| || ||| Sbjct 338999 CCTGCTTTATAACCATTTTCAAGTGGATCTGCTGTGTAAGCTGTTGCT 338952 >seq16 Length=199848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 142654 CCTTTGATTGCGCCACCAGTATCTAGAGCCATTGCTTCTCCGTAGCCTTCTACATATACT 142713 ||||| ||||| | |||||||||| ||| |||||| ||| || |||||||||||||| Sbjct 160398 CCTTTTATTGCACTACCAGTATCTCCAGCAATTGCTGTTCCATATCCTTCTACATATACA 160339 Query 142714 CTAGAACCTAAGGGAATTACTCGTGGGTCTACAGCAATAACTCGTGCGTTTGGATTCTTA 142773 |||||||||| || || || ||| ||||||||||| | | ||||||||| | Sbjct 160338 GTAGAACCTAATGGGATAACAGATGGATCTACAGCAATTAATTTCATGTTTGGATTTGCA 160279 Query 142774 CTTAAGTTA 142782 |||| ||| Sbjct 160278 GTTAAATTA 160270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601193579200