Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_018863.1 Length=162596 Score E Sequences producing significant alignments: (Bits) Value seq8 161 1e-34 seq7 152 5e-32 seq361 150 2e-31 seq6 140 3e-28 >seq8 Length=318055 Score = 161 bits (178), Expect = 1e-34 Identities = 173/226 (77%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 143673 ATCGATACGATTACCTTTGATTGCACCGCCTGTATCTCCTGCGATTGCTTCTCCATAACC 143732 ||| ||||| |||||||| |||||||| || |||||||| ||||| |||||||| ||||| Sbjct 28320 ATCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACC 28379 Query 143733 TTCAACATAAATACGAGAACCAAGTGGAATTACTCTAGGGTCAACTGCAACCATTTTCAT 143792 ||| || | | ||| || | ||| |||||| | |||||||| || | ||||||||| Sbjct 28380 TTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCAT 28439 Query 143793 ACTAGGGTTTGCTGATAAGTTATGTCCCATTGCTGTTTTAACTACTCCACCATATGTACC 143852 | | || || || | ||| | ||| |||||||| ||| || || |||||||| || Sbjct 28440 ATTTGGATTCGCAGTTAAATCATGACCCATTGCAGTTAATACACGGCCGCCATATGTGCC 28499 Query 143853 GCCATTCTCTGCT-GGGTCTGCTGTATATGCAGTAGCAACAACTGT 143897 || || || ||| |||| ||||||||||| ||||| |||||||| Sbjct 28500 ACCGTTTTC-GCTCGGGTGAGCTGTATATGCTGTAGCTACAACTGT 28544 >seq7 Length=350003 Score = 152 bits (168), Expect = 5e-32 Identities = 209/290 (72%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 143611 ATTGTAACTTGTACTGTTTTTCTTCCCCAGTCACTAGAAACCTTCTTGTTTGG---CATC 143667 ||| | |||| || |||| ||||||||| | ||| | || | |||| ||| Sbjct 229275 ATTTTCACTTTAACAGTTTGTCTTCCCCAATTCATAG---CTTTACTTTTTGAACCCATT 229219 Query 143668 AATACATCGATACGATTACCTTTGATTGCACCGCCTGTATCTCCTGCGATTGCTTCTCCA 143727 || ||||| |||||||||||||| ||||||| || ||||| || ||||| ||||||||| Sbjct 229218 AAAACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCCA 229159 Query 143728 TAACCTTCAACATAAATACGAGAACCAAGTGGAATTACTCTAGGGTCAACTGCAACCATT 143787 || ||||| || | | ||| || | ||| |||||| | ||||||||||| | ||| Sbjct 229158 TAGCCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAATT 229099 Query 143788 TTCATACTAGGGTTTGCTGATAAGTTATGTCCCATTGCTGTTTTAACTACTCCACCATAT 143847 ||||| | || ||||| | ||| | ||| ||||| || ||| ||| |||||||||| Sbjct 229098 CTCATATTCGGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCACCATAT 229039 Query 143848 GTACCGCCATTCTCTGCTGGGTCTGCTGTATATGCAGTAGCAACAACTGT 143897 ||| ||||| || ||| || || ||||| || || || || || || Sbjct 229038 GTA---CCATTTTCACTTGGATCAGCAGTATACGCTGTCGCTACTACCGT 228992 >seq361 Length=20807 Score = 150 bits (166), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 143668 AATACATCGATACGATTACCTTTGATTGCACCGCCTGTATCTCCTGCGATTGCTTCTCCA 143727 |||||||| |||||||| ||||| || ||||| || || ||||| || || ||||||||| Sbjct 1287 AATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCCA 1228 Query 143728 TAACCTTCAACATAAATACGAGAACCAAGTGGAATTACTCTAGGGTCAACTGCAACCATT 143787 || ||||| || | | || ||||| ||||||||| | || ||||| |||| | | Sbjct 1227 TATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTACT 1168 Query 143788 TTCATACTAGGGTTTGCTGATAAGTTATGTCCCATTGCTGTTTTAACTACTCCACCATAT 143847 |||||| | || ||||||| ||| | ||| |||||||| ||| || |||||||| Sbjct 1167 TTCATATTTGGATTTGCTGTTAAATCATGCCCCATTGCAGTTAATACACGACCACCATAC 1108 Query 143848 GTACCGCCATTCTCTGCTGGGTCTGCTGTATATGCAGTAGCAACAACTGTAA 143899 | | |||||||| || |||||||||||||| || || | ||||||| Sbjct 1107 GAA---CCATTCTCACTCGGATCTGCTGTATATGCCGTCGCTTCTACTGTAA 1059 >seq6 Length=382643 Score = 140 bits (154), Expect = 3e-28 Identities = 209/295 (71%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 143602 TAATTTAGGATTGTAACTTGTACTGTTTTTCTTCCCCAGTCACTAGA--AACCTTCTTGT 143659 || |||| | | ||||| |||||||| | ||||||| ||| || |||||| | | Sbjct 339239 TAGTTTAATACTTTAACTGTAACTGTTTTACGTCCCCAGCTACTTGATGAACCTT--TAT 339182 Query 143660 TTGGCATCAATACATCGATACGATTACCTTTGATTGCACCGCCTGTATCTCCTGCGATTG 143719 |||||| || || ||||| ||||||||| || || || || ||||| || ||||||| Sbjct 339181 CTGGCATTAAAACGTCGATTTTATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTG 339122 Query 143720 CTTCTCCATAACCTTCAACATAAATACGAGAACCAAGTGGAATTACTCTAGGGTCAACTG 143779 || |||| ||||||||||| | | ||||| | |||||| || || || ||||||| Sbjct 339121 CTACTCCGTAACCTTCAACCCATACTTTTGAACCTAATGGAATGACACTTGGATCAACTG 339062 Query 143780 CAACCATTTTCATACTAGGGTTTGCTGATAAGTTATGTCCCATTGCTGTTTTAACTACTC 143839 ||| | |||||| | || || |||| |||||| || || | |||| ||| ||| Sbjct 339061 CAATTAGTTTCATGTTTGGATTAGCTGTTAAGTTGTGGCCTAAAGCTGATTTTACTTGGT 339002 Query 143840 CACCATATGTACCGCCATTCTCTGCTGGGTCTGCTGTATATGCAGTAGCAACAAC 143894 | || | || ||||| || ||| |||||||| || || || || ||||| Sbjct 339001 CGCCTGCTTTATAACCATTTTCAAGTGGATCTGCTGTGTAAGCTGTTGCTACAAC 338947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520143795303200