Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-32 seq133 141 2e-28 seq8 125 2e-23 seq1 93.3 1e-13 seq4130 87.8 4e-12 seq3015 87.8 4e-12 seq325 87.8 4e-12 seq3539 86.0 1e-11 seq69 86.0 1e-11 >seq2 Length=633208 Score = 156 bits (172), Expect = 1e-32 Identities = 334/490 (68%), Gaps = 18/490 (4%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||| ||||||| |||| || || || | |||| | || | | |||| | | Sbjct 18932 AGCAGGGAAAATTGATCCTGTAATCGGCCGTGATAGTGAAATACGACG-TGTAATCCGTA 18990 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 ||||||| |||||||| ||||| ||| | ||| |||| || |||||||||||||||| Sbjct 18991 TTCTTTCACGTAAAACGAAAAACAATCCGGTTTTAATTGGGGAGCCAGGTGTTGGTAAAA 19050 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 || ||||||||| || |||| || || || | || ||||| || || ||| Sbjct 19051 CAGCAATCGTTGAAGGGCTAGCCCAGCGTATTGTGAAAAAGGATGTACCTGAAGGATTGA 19110 Query 150486 AAGATGTTGAA--ATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 |||| | ||| ||| || | || ||||| ||||| | |||||| | || | || Sbjct 19111 AAGA--TAGAACGATTTTTGCGTTAGATATGAGTGCACTCGTAGCTGGTGCGAAATTCCG 19168 Query 150544 TGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---- 150599 |||||| |||||||| ||| | | | | || | ||| | ||| | | || | Sbjct 19169 TGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAATGAAATTAAAAAGAGTGAAGGACG 19228 Query 150600 -ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGC 150658 || |||| | ||||| |||||| | ||||| || | || |||||| || | || Sbjct 19229 CATTTTAT--TATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAGAAGGA 19286 Query 150659 GGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTC 150718 | | ||||| | |||||||||||||| || | || |||||| | | | Sbjct 19287 G---CCATGGATGCAGGAAATATGTTAAAACCGATGCTTGCACGTGGTGAACTGCATTGT 19343 Query 150719 ATCGGTGCAACAAC-CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACA 150777 || || || ||||| ||| ||||||||||| ||| | ||||| |||||| |||| ||| | Sbjct 19344 ATTGGAGCCACAACACTA-GATGAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGA 19402 Query 150778 GCGTCGTTTC 150787 | |||||| Sbjct 19403 AAGACGTTTC 19412 >seq133 Length=58497 Score = 141 bits (156), Expect = 2e-28 Identities = 311/456 (68%), Gaps = 15/456 (3%) Strand=Plus/Minus Query 150374 CGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATC 150433 |||| ||| ||||| ||| | |||| |||| ||||| ||||| ||||||||| ||| Sbjct 55352 CGTAGAACAAAAAACAATCCAGTGTTAATTGGAGAACCTGGTGTAGGTAAAACAGCAATT 55293 Query 150434 GTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTT 150493 | ||| || |||||||| | |||| ||| ||| ||||| || | | | |||| Sbjct 55292 GCTGAAGGGTTAGCACAGCAAATCGTAAATAATGAAGTTCCTGAAACGTTAAGAGATAAG 55233 Query 150494 GAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTC 150553 || | | | ||||||| || | ||||| || || ||||||||||| || Sbjct 55232 CGTGTTATGACACTAGATATGGGAACAGTGGTAGCTGGGACGAAATATCGTGGTGAGTTT 55173 Query 150554 GAAGAACGTGTAGACAATTTGCTACAAGAACTA---AAAGAACGCGATGATGTTATTCTG 150610 ||||| ||| || | || | | | ||| || ||| | | || || ||||||| Sbjct 55172 GAAGATCGTTTAAAGAAAGTAATGGATGAAATACGTCAAGCA-GGGA--ATATTATTCTA 55116 Query 150611 TTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGAT 150670 || || |||||| | ||||| | || ||||| |||| || | | ||| | | ||| Sbjct 55115 TTTATTGATGAACTTCATACATTAATCGGTGCAGGTG-GA--GCAGAAGGTGCAATCGAT 55059 Query 150671 --ATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTC-GTGTCATCGGTGCA 150727 || | ||||| |||||||| || || | ||||| ||| | | ||| || ||||| Sbjct 55058 GCATCA--AATATTTTAAAACCATCTTTAGCACGCGGAGAATTACAATGT-ATTGGTGCG 55002 Query 150728 ACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 ||||| | ||||| ||||||||| | |||||||| |||||||| || || | |||||| Sbjct 55001 ACAACTTTAGATGAGTATCGTAAATATATTGAAAAGGATGCAGCTTTAGAGAGACGTTTC 54942 Query 150788 ATGAAGGTTGATATTGTTGAACCGACACTTGAAGAA 150823 | || || ||| ||| |||| || |||||| Sbjct 54941 CAGCCAATTCATGTTGATGAGCCGAGTCTAGAAGAA 54906 >seq8 Length=318055 Score = 125 bits (138), Expect = 2e-23 Identities = 310/455 (68%), Gaps = 29/455 (6%) Strand=Plus/Plus Query 73660 GCGATGTAGAAATTGTAAACAATTATTCTTGGACTAAAGATATTAATATGCTTGAGTTTT 73719 |||| || | || ||||| || ||| |||||| | || || ||||| ||||||||| Sbjct 175258 GCGAAGTGAAGATGGTAAATAACTATGATTGGACACATGAAATAAATATTATTGAGTTTT 175317 Query 73720 TGCGTGATTACGGTAAATGCTTCACTGTGAATAATATGATGAACAAAGAATCT-GTACGT 73778 | ||||||||||| ||| ||| | | |||| ||| | | | ||| || | ||| Sbjct 175318 TACGTGATTACGGGAAAAACTTTAGCATCAATAGCATGTT-AGCGAAGGATATTGTAGCA 175376 Query 73779 TCACGTATTGAACGCGATGAACAAGGTATTTCTTTCACTGAATTTTCGTATCAAATTCTT 73838 ||| | || ||| |||||||||||||| ||||| |||| |||||| | Sbjct 175377 AGCCGTTTAGAT--------ACA-GGTATTTCTTTCACGGAATTCACGTACCAAATTTTG 175427 Query 73839 CAAGCAATGGACTTTGAATATTTGT--ACGAAATGAATAACTGCAAAATCCAAATTGGTG 73896 ||||| |||||||| | |||| | |||||| || | | | || | |||||||||| Sbjct 175428 CAAGCGATGGACTTCCATCATTTATACACGAAA-GAGGATGTTC-AACTTCAAATTGGTG 175485 Query 73897 GTTCTGACCAATGGGGTAATATGATTGCTGGAATTGATTTGATTCATAAAATCCACGGCA 73956 || |||||||||||| ||||| | ||| | ||||| |||| ||| | | || Sbjct 175486 GTAGTGACCAATGGGGAAATATTACGAGTGGTTTAGATTTAATTCGTAAGTTAGAAGGTC 175545 Query 73957 ATGATGC---AGACTGCGGTGTTATCACTATACCACTAGTTACT-AAATCTGATGGTACT 74012 |||| || || | ||| ||| || || || || ||| | ||||| || ||||| Sbjct 175546 ATGAGGCGAAAGTATTCGG-ATTA--ACGATTCCGTTA-TTATTAAAATCGGACGGTACG 175601 Query 74013 AAATTTGGTAAATCAGAATCTGGTACTATCTGG-TTAA--CTGAACAACGCACTACGCCA 74069 || ||||||||||||| | |||| | | ||| || | ||||| || || || || Sbjct 175602 AAGTTTGGTAAATCAGCAGGTGGTGCGGTTTGGCTTGATCCTGAAAAA---ACGACACCG 175658 Query 74070 TATCACTTCTTCCAGTTCTGGCGTAATCTAGATGA 74104 | | | || | |||||||||| ||| |||||| Sbjct 175659 TTTGAATTTTACCAGTTCTGGGTAAATACAGATGA 175693 >seq1 Length=1156483 Score = 93.3 bits (102), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 73803 GGTATTTCTTTCACTGAATTTTCGTATCAAATTCTTCAAGCAATGGACTTTGAATATTTG 73862 |||||||| || ||||| ||| ||| ||| | ||| || ||||| | | || Sbjct 953832 GGTATTTCATTTACTGAGTTTAGTTATATGATTTTACAATCATACGACTTCCTAAACTTA 953773 Query 73863 TACGAAATGAATAACTGCAAAATCCAAATTGGTGGTTCTGACCAATGGGGTAATATGATT 73922 ||| || |||| ||| | ||||| |||||| ||||||||||||||| || | Sbjct 953772 TACCAACACCATAAGTGCCGCCTACAAATCGGTGGTAGTGACCAATGGGGTAACATTACA 953713 Query 73923 GCTGGAATTGATTTGATTCATAAAATCCACGGCAATGATGC---AGACTGCGGTGTTATC 73979 ||||| |||| || || | |||| | | | ||||| || | |||| ||| | Sbjct 953712 GCTGGTCTTGAATTAATCCGTAAATCAGAAG---AAGATGCGAAAGCATTCGGT-TTAAC 953657 Query 73980 ACTATACCACTAGTTACTAAATCTGATGGTACTAAATTTGGTAAATCAGAATCTGGTACT 74039 | || ||||| |||||||||||||| ||||| || ||||||||| ||||| || | Sbjct 953656 A--ATTCCACTTGTTACTAAATCTGACGGTACGAAGTTTGGTAAAACAGAAGGCGGCGCA 953599 Query 74040 ATCTGGTTA 74048 || |||||| Sbjct 953598 ATTTGGTTA 953590 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 324513 ATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGA 324572 ||||||| |||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 1156483 ATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGA 1156424 Query 324573 ACCCGTTTAGCTCCAC 324588 |||| | ||||||| Sbjct 1156423 TCCCGCTAGGCTCCAC 1156408 >seq4130 Length=254 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 324513 ATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGA 324572 ||||||| |||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 78 ATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGA 19 Query 324573 ACCCGTTTAGCTCCAC 324588 |||| | ||||||| Sbjct 18 TCCCGCTAGGCTCCAC 3 >seq3015 Length=428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 324514 TGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAA 324573 |||||| |||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 151 TGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGAT 92 Query 324574 CCCGTTTAGCTCCACAAA 324591 |||| | ||||||| || Sbjct 91 CCCGCTAGGCTCCACCAA 74 >seq325 Length=23210 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 324513 ATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGA 324572 ||||||| |||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 23210 ATGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGA 23151 Query 324573 ACCCGTTTAGCTCCAC 324588 |||| | ||||||| Sbjct 23150 TCCCGCTAGGCTCCAC 23135 >seq3539 Length=324 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 324514 TGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAA 324573 |||||| |||||||| |||||||||| |||||||||||| || |||||| |||||||| Sbjct 156 TGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGAT 97 Query 324574 CCCGTTTAGCTCCAC 324588 |||| | ||||||| Sbjct 96 CCCGCTAGGCTCCAC 82 >seq69 Length=88854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||| ||||| |||||||| |||||||||| |||||||||||| || |||||| |||||| Sbjct 87862 ATAAGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTC 87803 Query 324571 GAACCCGTTTAGCTCCA 324587 || |||| | |||||| Sbjct 87802 GATCCCGCTAGGCTCCA 87786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147510339431610