Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019487.1 Length=143986 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq1 98.7 9e-16 >seq2 Length=633208 Score = 154 bits (170), Expect = 1e-32 Identities = 366/549 (67%), Gaps = 12/549 (2%) Strand=Plus/Plus Query 103451 TTCCCATCTTTTATGAGTGCGTTTAAGTTCTACAACGACTATGCGCTTAAAACGAACGAC 103510 |||| ||||| |||| || | |||||||||||| || |||||| | |||||||| || Sbjct 183790 TTCCAATCTTATATGGCAGCATCTAAGTTCTACAAAGATTATGCGTTAAAAACGAATGAT 183849 Query 103511 AAAAAACGTATCTTAGAACGGTACGAAGACCGTGTTGTAATTGTAGCGCTTTTCTTTGGA 103570 |||||| ||||||| | || ||||| ||||| | |||||| | | | ||| ||| Sbjct 183850 CAAAAACAATACTTAGAAAGCTATGAAGATCGTGTAGCAATTGTTTCATTATACTTAGGA 183909 Query 103571 GATGGAGATGTTGAAAAGGCGTTAGCCTTTGTAGACACTATGATGAATCAAGAGTTTCAA 103630 || |||||| ||||| | || | | || || | || ||| | | ||| Sbjct 183910 CGCGGTGATGTTTCGAAGGCAAGACAATTCGCAAGCATGATTGTAAAACAAAACTACCAA 183969 Query 103631 CCTGCTACCCCTACGTTTTTAAACGCGGGACGTAAACGTAGAGGAGAGCTTGTAAGCTGT 103690 || || || || || |||||||| |||||| | | | |||||||| | || ||| Sbjct 183970 CCAGCGACACCAACCTTTTTAAATGCGGGAAGAAGCAGAAGAGGAGAAATGGTGTCTTGT 184029 Query 103691 TTCTTACTAGAGGTGGGGGACTCTCTGAACGACATTGCGAT-GGC-----GGTCGAGACT 103744 ||||| ||||| ||| || | || || ||| |||| ||| | | ||| Sbjct 184030 TTCTTGTTAGAGATGGACGA-TAGCTTAA----ATT-CGATCGGCTTTAACATTAATACT 184083 Query 103745 GCTATGCAACTGTCAAAAGTAGGCGGAGGCGTATCATTAAACCTTTCGAAAATCCGTTCT 103804 || |||||| | || ||| | ||||| || ||| | |||||| | || || | || | Sbjct 184084 GCGATGCAATTATCGAAAATCGGCGGGGGAGTAGCTTTAAACTTATCTAAGCTACGCGCA 184143 Query 103805 CAAGGAGAAGCCATCAAAGAGATCAAGGGAGCTGCTAAAGGCGTTGTAGGGGTTATGAAA 103864 | || || || |||| ||| | ||||| | ||||| ||| ||||||||| Sbjct 184144 CGCGGTGAGCAAATTAAAGGTATCGACAACGCTGCAAGTGGCGTAGTACCTGTTATGAAA 184203 Query 103865 CTTCTTGATAACGCCTTCCGTTATGCAGACCAGATGGGACAACGACAAGGCTCTGGTAGC 103924 | ||||| | | || ||||| | ||| | || |||||| |||| | ||| Sbjct 184204 TTGCTTGAAGATTCGTTTTCATATGCGAATCAGCTTGGCCAACGAAAAGGTGCCGGTGCA 184263 Query 103925 GCGTATTTAAATATTTTTCACGCCGATATTAATGAGTTCCTCGATACAAAGAAAATATCT 103984 | |||||||| ||||| || ||||||| ||| ||||| |||||||| |||||| | Sbjct 184264 GTATATTTAAACATTTTCCATTGGGATATTATTGAATTCCTTGATACAAAAAAAATAAAT 184323 Query 103985 GCTGACGAG 103993 || || ||| Sbjct 184324 GCCGATGAG 184332 >seq1 Length=1156483 Score = 98.7 bits (108), Expect = 9e-16 Identities = 191/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 33267 AATTTTTACTTTTGTCCCATCAGGGTATGGTAATAATTGATGACCTACCCAAGAACCAGC 33326 || ||||||| || ||||| |||||| ||| | || ||||||||||| || || Sbjct 307735 AAATTTTACTCGCGTACCATCTGGGTATTTATCTAACTTATTCCCTACCCAAGAGCCTGC 307794 Query 33327 TCCGCGGTTATCTGAAGGTGAAATGTATTTAACGCTTGCGCCTTCTCCTCCTTCTTCGCA 33386 ||| |||||||| | || || |||| || ||| |||| ||| ||||| | ||| Sbjct 307795 TCCACGGTTATCCGCCGGACTTATATATTCAATATGTGCTCCTTTTCCGCCTTCCTTGCA 307854 Query 33387 CATGGCCATAGGGAACTCATCCCGATCAAAACCCTTCTTTGTAGGGAAACCTTTGAGAGA 33446 ||| ||||| || | ||||| |||||| | || || |||| || | | | || Sbjct 307855 CATCGCCATTGGCCATTCATCACGATCATACCCTTTTTTTGATGGATATGGTGCTAACGA 307914 Query 33447 CAACTCGCGTCTCGCATCCGCACCGTCACGATCTATTGTACAGATGTCACTATGTCCGGC 33506 ||| | | ||| | | ||||| ||||||| |||||||| | || ||| || | Sbjct 307915 CAATTTCCTTCTATCTGCAGCACCACCACGATCGATTGTACAAACTTCTGAATGCCCTTC 307974 Query 33507 TTCGATAGCCTCACGAATATGCTGCCCGGTTTCAGGATAACG 33548 || ||||| || |||||| | || || || |||||||| Sbjct 307975 TTTTATAGCATCCGTAATATGTTTTCCTGTCTCTGGATAACG 308016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460595848561200