Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq472 131 3e-25 >seq472 Length=14052 Score = 131 bits (144), Expect = 3e-25 Identities = 601/943 (64%), Gaps = 28/943 (3%) Strand=Plus/Plus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||| ||||| |||| || | || |||| ||||||||| || || || | | ||||| Sbjct 9845 GCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTG 9904 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 ||||| ||||| || || ||| |||||| || | |||| | || || || Sbjct 9905 AGCTTACGCGCCTCGGGCGAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCGAGA 9964 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA-CTTGGAGCACTCCTCCAA 213370 || || || |||||||||||||| | ||| | | ||| || || | || ||| | Sbjct 9965 CCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTTTTGCGC-CTCGATGAC 10023 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||| || ||||| ||||||||| ||| | |||| | | | || ||| ||| | Sbjct 10024 GGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTC 10083 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC-TGCACAAACTCAGGCAGGGCGA 213489 | || || | || || |||| | |||||| || || ||| |||| |||| Sbjct 10084 GTGCA---AC---TTCTTAAAGTCGTACACGCCGTCCTTGATGAAGCTC-GGCAACGCGA 10136 Query 213490 TGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGC 213549 | ||||| |||||| ||||| ||| | | | | |||||| ||||||||||||| Sbjct 10137 TCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGC 10196 Query 213550 ACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAAT 213609 ||||||| | ||| ||||| || |||| ||||| || || ||| || | | Sbjct 10197 ACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGT 10256 Query 213610 CCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGA 213669 | ||||||||||| | ||| || || || | ||||| | || ||| | ||| | Sbjct 10257 CTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAA 10316 Query 213670 GGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC---TCGTACTGTTCGT 213726 | | || || | | || | ||| | | || ||||| | ||| Sbjct 10317 GCTTTTGCGCGGGGATCGTTTTCTTGGC----GCGGCCCT--CCTTTTCGTATTTCTCGA 10370 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGAT---GCGGGAC 213783 | | || ||| || | ||| |||| || || || || || | ||||| | Sbjct 10371 ACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGGCCGGG---GGCTTCGGCGGGGC 10427 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | ||| ||| || ||| | | ||| | || |||||| || || || | ||| | Sbjct 10428 AGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGA 10487 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 |||| ||| || || | | | || ||| || ||| ||||| || || | Sbjct 10488 GCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCA 10547 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| ||| |||||||||||||| | |||||| || ||||| || | || Sbjct 10548 GGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCT 10607 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCA 214020 | ||||| || ||||| || | || ||||| ||| || || | ||| || | Sbjct 10608 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAA 10667 Query 214021 GCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCA 214080 ||||| || | ||||| || || || || || ||||||| || | | |||| | Sbjct 10668 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGA 10727 Query 214081 TGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 || | || || ||||||||| ||||||||| | ||||| Sbjct 10728 TGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCA 10770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469397548800