Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq472 217 3e-51 seq14 95.1 2e-14 >seq472 Length=14052 Score = 217 bits (240), Expect = 3e-51 Identities = 784/1214 (65%), Gaps = 37/1214 (3%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || ||||||||||||||||| ||||| ||||||||| | |||||||| ||| | Sbjct 9869 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAATCG 9928 Query 221483 AAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 || ||||| ||| || |||| | ||||||| || || || |||||||| ||||||| Sbjct 9929 AACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGATGG 9986 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | | ||| | |||||| ||| || |||||||| ||||||||||||| | Sbjct 9987 GGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGA 10046 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 ||| | ||| | || || ||| || || |||||| || |||| || || Sbjct 10047 TGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAAAGT 10100 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 | || ||||| | | || | | || | || ||| | || ||||| || Sbjct 10101 CGTACACGCCGTC--CTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCAAGT 10148 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780 | || ||||| ||||||| | |||| |||||||| || || ||||| Sbjct 10149 TGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACG 10208 Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 ||||||| || || || | || || || || || || || ||||| |||||||||| Sbjct 10209 ACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCA 10268 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 |||| || |||||| || | ||| || | |||||| || ||| || | | ||| Sbjct 10269 TAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGG 10328 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC---AA 221957 | ||| ||||| | ||||| |||||| || | | || || | | | Sbjct 10329 GGATCGTTTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTCTCGAACAAGGCGCGGA 10382 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || || | |||| ||||| || |||||| || | ||| ||| | Sbjct 10383 ACTCCTCGCCATAGACTTCGTGTAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAAT 10442 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | | | | ||| | || |||||| || || || ||||| ||||| ||||||| Sbjct 10443 CGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGAT 10502 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | | || |||||| ||||| ||| || | || |||| || || || | || Sbjct 10503 CACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGT 10562 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 | |||||||||||||| || |||| || | || ||||| |||||||||||||| || | Sbjct 10563 CGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGT 10622 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 | || | | | |||| ||| || || | || || | ||||| || | Sbjct 10623 CGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGC 10682 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATA 222316 |||| ||||| ||||| | ||| || | | ||| ||| | || |||||| Sbjct 10683 CGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCGATA 10741 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 ||||||||| || ||||| | ||||| |||| || ||||| ||||| || || Sbjct 10742 CCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCAATC 10801 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 || || ||||| | | | ||| ||||| ||||| | ||| | | | | | |||| Sbjct 10802 GAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCG 10861 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || || ||||| || |||||| |||||||||| | ||||| || | ||||| || Sbjct 10862 TTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGC 10921 Query 222497 ACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGG 222556 | ||| | | |||| || ||||| || | |||| | |||| ||||| || Sbjct 10922 AAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGC 10981 Query 222557 GGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGA 222614 || | || | |||| | | | || |||| ||| || ||| || || |||| Sbjct 10982 GGGCGTTCGGC--GACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGA 11039 Query 222615 ACCCAAAGTAGTTG 222628 | |||||||||||| Sbjct 11040 AGCCAAAGTAGTTG 11053 >seq14 Length=201404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 25488 GTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACAT 25547 ||||||||||||| | || ||||||||||||||||| || ||| |||||||||| Sbjct 60989 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 61048 Query 25548 GGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTG 25602 | ||| |||| || |||| | || ||||||| | || || | |||| | Sbjct 61049 GCACGACTGGGACAACAAGCTCAAGCC--CGACGAGCGCTACTTCATCTCGCACGTCCTC 61106 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || || || || ||||| || || || || |||||||| || |||| ||||| | | Sbjct 61107 GCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGT 61166 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || || |||| | ||||| || ||||||||||| || || Sbjct 61167 GAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAAT 61210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928781580500800