Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq2 529 1e-145 seq4 192 4e-44 >seq2 Length=633208 Score = 529 bits (586), Expect = 1e-145 Identities = 1256/1874 (67%), Gaps = 59/1874 (3%) Strand=Plus/Minus Query 21493 CACATTCTTCTACCGATAATTTTCTAGTACGAGTGTAGTAAAGGCTCTTCAGACCTTTCT 21552 |||| ||||| || |||||| | || | || || || || ||||| | ||||| | Sbjct 185611 CACACTCTTCCACGCTTAATTTACGTGTTCTCGTATAATACAGACTCTTTAAGCCTTTTT 185552 Query 21553 TGTACGCATATAAATAATACATAGCAAGCTCGTTTGTTGCGATATCACTATTTACATACA 21612 | | ||||| | || || || | || ||||| ||||||||||| || || | Sbjct 185551 TATGTGCATAGATGTAGTAACGTGCTAATTCACGTGTTGAAATATCACTATTAACGTAAA 185492 Query 21613 AAATAGTACTAATGCCTTGGTCAACGTGTGGTTGTATTTCTGCGATTAAGTCAATCAGTT 21672 ||| |||||||| |||||||||| ||| ||| |||||||||||||| ||||| | || Sbjct 185491 GAATTGTACTAATTCCTTGGTCAATATGTTCTTGAATTTCTGCGATTAAATCAATTAATT 185432 Query 21673 TGTACATGCTCATATCGTAAGCAGGTTTATACATTAAGAAATTCTGTTTAGATAAGTATG 21732 | || |||||||||||| || |||||| |||| | | ||| ||||| || | Sbjct 185431 TAAACTGATTCATATCGTAAGAAGATTTATAGTACCAGAACGTATCTTTTGATAAATACG 185372 Query 21733 GAGCAGGGAAGTACGTTTCTGCATTTTGGTATGTTCTCGGTTCGATTTTATGCGTA--AT 21790 | || | || ||| ||||| |||||||| | |||||||| | | || || Sbjct 185371 GCATTGGATAATATGTTGTCGCATTCGCATATGTTCTTGATTCGATTTGA--CTTACGAT 185314 Query 21791 TGGCATAACCGATTGA-GTAGCGTTCTGCACATATCCAATACTTTGTGTAGGTGCAATTG 21849 ||||| || | |||| || || || || || || | || |||||| || ||||| | Sbjct 185313 CGGCATTAC-GCTTGAAGTTGCATTTTGAACGTAACTGATTGATTGTGTTGGAGCAATGG 185255 Query 21850 CTAATCTATATCCGTTGTACATTCCTGTTAGCTTTACTGTATTACTTAATGCTAACCATT 21909 | | | |||| |||||| | || | || |||| | |||| | ||| | Sbjct 185254 CAAGACGATATGAGTTGTATAAACCATTCTTCTGTACTTGCTCTTTTAAACTTGTCCAAT 185195 Query 21910 CTGCTTTACCCGGAATTTCGATTCCTTCAAACAGCTTTTTAACTTTCTCTGTTTTAGGTG 21969 || |||| ||||| | ||||||||||| || | | |||||| || ||| || Sbjct 185194 CTTCTTTTGTTGGAATATGAATTCCTTCAAATAGTTGCTGAACTTTTTCAGTTACTGGGC 185135 Query 21970 AGAAGTCATTAACTAAATACTTATCGAAATATTTTCCGGAAGCATAATCCGATTTCTCGA 22029 | | || | | |||||| ||||| ||| | || |||||||| ||||| |||| Sbjct 185134 TGTAATCTGTCGTTTCATACTTTTCGAAGTATGTGCCATTCGCATAATCAGATTTATCGA 185075 Query 22030 ATCCTTTAAATGTTTCACCTTTTCTCAAT-GCTATTTCTGCGCTTGCTTCAATTGAGTAA 22088 | | |||||||| || |||||| || | || ||||| ||| ||||| ||||| Sbjct 185074 AGTCCTTAAATGTCTCGCCTTTT-TCTGTAGCGATTTCCATACTTTTCTCAATAGAGTAG 185016 Query 22089 TAGTTCAACATCATGAAGAATGTACGAGCAAAGTCTTTCGCTTCTTCAGATTCATAAGCA 22148 || || |||||||| |||||||||||||| || |||||||||||| || ||||||||| Sbjct 185015 TAATTTAACATCATAAAGAATGTACGAGCGAATTCTTTCGCTTCTGCACTTTCATAAGCG 184956 Query 22149 ATCAAGTTTTTAGATAAGTAGCCATGTAAGTTCATAGCTCCTAATCCTACTGAATGTAAT 22208 || ||||| | ||| || || ||||||||||| ||||| | ||| |||||||| | Sbjct 184955 ATTTTATTTTTTGCTAAATATCCGTGTAAGTTCATTGCTCCAAGTCCAACTGAATGAAGC 184896 Query 22209 TCTTCATTTGCTTTTTTAACACCTGGGGCGTTTTGGATCACCGACATATCTGATACCGCA 22268 || |||||||||||||| ||| ||| || || | || | || |||||| || || || Sbjct 184895 TCGTCATTTGCTTTTTTCACAGTTGGTGCATTCGGAATAATCGTCATATCAGAAACAGCT 184836 Query 22269 GTTAATGCGTACATTGCATTATGGATAATCATACGTAGTCGCTTGTCTTCCATTACGTTT 22328 ||||| || | |||| | ||| | ||| | | || | ||||||||||||| Sbjct 184835 GTTAAAGCTTCCATTCCCGCATGAACTGCTTCACGAATTTCTTTATTTTCCATTACGTTT 184776 Query 22329 ACGATGTTTAGTGAACCTAAGTTACAGCTAATATCGTTACGAATAATGTCTTCTTCTCCA 22388 ||||| |||| || |||||||||||| ||||||| ||| |||||||| ||| || Sbjct 184775 ACGATATTTAACGATCCTAAGTTACAGTTAATATCACGACGGATAATGTCATCTGTACCG 184716 Query 22389 TAATCCGTAATTGTTGATACTTCGGATAGTTGGAAGATTTCTGTACAAAGATTAGACATT 22448 ||||| | ||| ||| ||| || ||||||||||||||||| | || ||||| Sbjct 184715 TAATCATTTATTTCTGAAGTTTCTTGAAGCTGGAAGATTTCTGTACATAAGTTCGACATC 184656 Query 22449 TTAACTTCGCCTATTTCGCTAAGTGGATGATTGTCTCCATTTGCATTCCCTTTGTACATT 22508 || || || || || | | |||||| ||| | ||||||||| ||| ||||| Sbjct 184655 TTCACAGTTCCAATATCCTTCAATGGATG-TTGATT--ATTTGCATTTGATTTAAACATT 184599 Query 22509 AAGTACGGGTATCCGCTCTCTTGTTGTGTAATAGCTATACGAGTTAACATGTCTCTTCCC 22568 ||||| ||||| || ||| | || | ||||| || | | | ||| || | | | Sbjct 184598 AAGTATGGGTAACCAGACTCAAGCTGAATCATAGCGATTTTAATAAGCATATCACGTGCA 184539 Query 22569 GTCATAACTTCACCGCTGTTATTCTTTGGTTGATATTTACGAACACGGTCATCTTTTACT 22628 | ||| || | | || ||||| | || || | | |||| | Sbjct 184538 CTAATATCT--AGTG-GCTTCTTCTT-------CACTTTCGGA-TTGCTCAT-------T 184497 Query 22629 AAGATGTCATACATTAAGTCCATATCAATATCATC-CAACGCTACACCGAAATATTTCTC 22687 || || |||||| || || ||||||||||| || ||| || | | ||| | Sbjct 184496 AATTCATCGTACATTTCATCAATGTCAATATCATCTAAATGCT-TGCCATATTCTTTATA 184438 Query 22688 CACGTCATAAGGTGAGAATGTGTAGAATGGTTTATTTTCGATTACTAGTTGCATGAATTT 22747 || |||||| | ||| | ||| |||| |||| | || | | ||| || Sbjct 184437 AACCGTATAAGGCGCGAAAACATGGAAAGGTTCGTTTTTCTCAGCAAGCTCAAAGAACTT 184378 Query 22748 ATCCGGAACAATAACACCGATTGACATAGATTGAATTCTGCTCTTTTCATCTACGTTAAT 22807 | ||||| |||| |||||||| | ||| ||||| | |||||| ||||| | || || Sbjct 184377 ACTTGGAACGATAATTCCGATTGATAGAGACTGAATACGGCTCTTCTCATCGGCATTTAT 184318 Query 22808 TCGTTTTGTATCTAACATGCGGATAATGTCCATATGGAAGATATTTAAGTAAGTTGCTCC 22867 | ||||||||| | | ||||| ||| |||||| || ||||| || ||| || Sbjct 184317 TTTTTTTGTATCAAGGAATTCAATAATATCCCAATGGAAAATGTTTAAATATACTGCACC 184258 Query 22868 TGCACCTTTTCGCTGTCCTAATTGGTTTGCGTAAGAGAATGCATCTTCTAATAACTTCAT 22927 ||||||||||| || || | || || || || || || | |||||| | || ||||| Sbjct 184257 GGCACCTTTTCGTTGGCCAAGCTGATTCGCATATGAAAACGAATCTTCAAGCAATTTCAT 184198 Query 22928 TACTGGAACAATACCGCTACTTGCTCC---CTCGATTTCTTTAATCGGGTCTGAAGTAGC 22984 || || || | ||| |||||| | ||||| ||||||| | || || Sbjct 184197 AACAGGTACTA---CGCCACTTGCAGCGTTGTCGATACCTTTAATTTGCTCACCGCGTGC 184141 Query 22985 TCTTATTTTAGATAAGTTTAATGCTACTCCACCGCCAATTTTCGATAACTGCATTGCTTT 23044 | || |||||||||||||| |||||||| ||||| ||||||||||| ||||| || | Sbjct 184140 GCGTAGCTTAGATAAGTTTAAAGCTACTCCCCCGCCGATTTTCGATAATTGCATCGCAGT 184081 Query 23045 GTTAATTGCAAATCCAATTCCGTTTAA---ATCGTCCCCAACTTCAGTAAGGAAGCATGA 23101 ||||| ||| || || ||||| ||||| ||| || | || ||| || || Sbjct 184080 ATTAATGTTAAAGCCGATCGAATTTAAGCTATCGT--CCATCTCTAACAA-GAAACAAGA 184024 Query 23102 TACTAATTCACCACGTCTTGCTT-TTCCACTATTTAAGAAGGTAGGCGTTGCGGGTTGAT 23160 || | ||| || | || ||||| |||| |||||| ||||| || || || ||||| | Sbjct 184023 CACCATTTCTCCTCTTC-TGCTTCTTCCCGCATTTAAAAAGGTTGGTGTCGCTGGTTGGT 183965 Query 23161 ATAGTTGTTTTCCGATAATTTCAGCATAGCGTCTAGCTTGTTCAAAGTCCCCTCTTGCTA 23220 | ||||||| | || || || | |||| || | || || || | | ||| Sbjct 183964 AGTTTTGTTTTACAATCATGCTTGCGAATTGTCTTGCCTTCGAAACATCACCGCGTCCTA 183905 Query 23221 AATACAGAGAAACGATTACCACACGGTCTTCGTAGAACTCTAAATACTTTCGTTTGTCTT 23280 | || | ||||| ||| | ||||| ||||| ||| ||||| || | |||| Sbjct 183904 AGTATAATGAAACAATTGCTACACGATCTTCATAGCTTTCTAAGTA---TTGTTT----- 183853 Query 23281 CAGCTTTTTCATTCGATTTAAGCGCATAGTCTAAATAGAA-TTTGCTGATTGCCATATAC 23339 || ||||||| ||| | |||||| ||| ||||| || | || ||||||||| Sbjct 183852 ----TTGATCATTCGTTTTTAACGCATAATCTTTGTAGAACTTAGATG-CTGCCATATAA 183798 Query 23340 GATTGGAATTCGAA 23353 |||||||| ||||| Sbjct 183797 GATTGGAACTCGAA 183784 Score = 217 bits (240), Expect = 9e-52 Identities = 321/449 (71%), Gaps = 8/449 (2%) Strand=Plus/Minus Query 15335 TTCTGCGTAACTTGTAGGTGTTTCGAATAGTCGTACAAACTCTACTCGTGCATCTAATGT 15394 ||| || ||||| || || || || ||||| || ||||| || || || || || | | Sbjct 178563 TTCCGCATAACTAGTCGGCGTCTCAAATAGACGAACAAATTCAACGCGAGCTCCTT-TAT 178505 Query 15395 ATCCG--CAA---ATTC-CTTAT-TAATTTCTTCTTCCATCTTTTTATAAATCCAATAGA 15447 || || || |||| ||| | | | | ||||| ||||||||| |||||||||| || Sbjct 178504 ATTCGTTCACTCGATTCTCTTTTGTTAGTGCTTCTGCCATCTTTTCATAAATCCAAACGA 178445 Query 15448 CCATGTTCTCTGCTGTCGTATTCATTGGCGGTAATGTTTCGTTTAGGTAACGATGGTCTA 15507 |||| || || || ||||||||||||| ||||| |||||||||| |||||||| |||| Sbjct 178444 CCATATTTTCAGCAGTCGTATTCATTGCAGGTAACGTTTCGTTTAAATAACGATGATCTA 178385 Query 15508 AATGTACCTCTATTTCGTCTTTCCAAATGCGCTTAATTTCCCCGAAATCAATAGCTAAAC 15567 || | |||||||| | |||||||| || || || || || ||||| || | || Sbjct 178384 GATAAATTTCTATTTCATTCTTCCAAATTTCTTTTATATCTCCAAAGTCAATTGCAAGAC 178325 Query 15568 CACGGAAATCTGTAAAGCTACTAATTCCAAACACGACTTTATATGTATGTCCGTGAAGGT 15627 | || | | | | |||||||||||| || ||||||||||| || || || | || Sbjct 178324 CTATTTCATTTACATATCCACTAATTCCAAATACAACTTTATATGTGTGACCATGTAAGT 178265 Query 15628 TCTTACATTTACCTTCGTACATGTGTAGATGATGTGCGGAATCAAAAGTAAATTCCTTAG 15687 | |||||||| ||||| || ||||| ||| ||||| | |||||| ||||||||||| Sbjct 178264 TTTTACATTTCCCTTCATAACAGTGTAAATGGTGTGCTGCATCAAATGTAAATTCCTTGC 178205 Query 15688 ATACTAATACTCGTTTCTTATGATACTTTAATTGGTCTGCTTTAATATCTGTTCCAAACT 15747 || | ||||| ||| ||||| || || | ||| | | |||||| | | | | Sbjct 178204 TGACCATTACTCTTTTATTATGGTATTTGAGTTGTTTACGCTGAATATCCTTGTCCATTT 178145 Query 15748 TCTGCAATTCGTCTACGATTCTAAAACCA 15776 | ||||| | |||||||| | ||| ||| Sbjct 178144 TTTGCAAATTCTCTACGATGCGAAATCCA 178116 Score = 176 bits (194), Expect = 3e-39 Identities = 262/369 (71%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 20414 AAGATTTGTTGCGCAATCAATCCAACGAATACACCGTGAATACTTTCATCTCTTAAAATC 20473 ||||||||||| || | | || |||||||| |||||||| ||||| | | ||| Sbjct 186338 AAGATTTGTTGTGCTAAAATACCGACGAATACGCCGTGAATTGACTCATCACGAATTATC 186279 Query 20474 AAATTAATGATTTCTCCACTTGCTTTCATCCTACCTTGTCCCGCTAATTTTAGTGGTAGG 20533 || || || || || ||||||||| | | | ||||| || ||||| | ||||| | Sbjct 186278 AAGTTGATAATCTCACCACTTGCTGTTAGTTTTCCTTGACCAGCTAAGTAAAGTGGATAG 186219 Query 20534 TAGAATCCACTATAGAACAAGTATGATTCCAATAGTACGGATACGCACATTGCCATGTAT 20593 ||||||| |||||||| ||||| ||| || | || | | ||||||||||||| Sbjct 186218 AAGAATCCGCTATAGAATAAGTAACTTTCTAAGAACACACTTGCTACCATTGCCATGTAT 186159 Query 20594 AACTCACGTGGCGTTACGATTGGTTTTAATAATCTGCGGTAATAAGTAGTTATGATTCCC 20653 ||||| | ||||| || |||||||| | || || ||| |||| || || || Sbjct 186158 AACTCTTTTTTTGTTACTTCAGGCTTTAATAAACGACGATAGTAACTAGTAATAATACCA 186099 Query 20654 GCTTTCTTCTGCAAGAATCCG-TGTTTCTCTACCCAGTCGAATACTTCTTGCGTTTCTTC 20712 ||||| |||| |||| | | | || || ||||||||||| || | || | | ||||| Sbjct 186098 GCTTTTTTCT-CAAGTAACGGATGATTGTCTACCCAGTCAAAAATATCATCAATCTCTTC 186040 Query 20713 TTCTGTACAGATTGTAGTGAAGATTGTACTATAACTCTTCGCATGCATACATTCCATAGC 20772 ||||||| | ||| ||||| || ||||||||| |||||||| | ||||||||| Sbjct 186039 TTCTGTAGCTAATGTTGTGAAAATGTGACTATAACTTTTCGCATGTACTTCTTCCATAGC 185980 Query 20773 ACCCATGAA 20781 |||||||| Sbjct 185979 TCCCATGAA 185971 Score = 107 bits (118), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 20111 ACATTCATTGCTTTTACATAACCATTTCCCTTTTGAGAGAAGAAGTCATGATTCTTAGTT 20170 || ||| |||||||||| ||||||||||| ||| ||||||||| ||||| || || || Sbjct 186638 ACGTTCGTTGCTTTTACGTAACCATTTCCTTTTACAGAGAAGAAATCATGGTTTTTCGTA 186579 Query 20171 TGTGTATCTAATCCGTTCTTAACAATTGGATTAATTTCTTCTTCCGGATATGGAGCTTCA 20230 | |||| ||| || || ||| ||||| |||||||||||||| | | | ||| Sbjct 186578 TCTGTACGTAAACCATTTAAAACGATTGGGTTAATTTCTTCTTCTTCAAACTTCGGCTCA 186519 Query 20231 TACCCTAAGTTCATCATTGCTTTATTTGCGTTGTAACGA 20269 ||||||||||| | ||||||| || ||||||||| Sbjct 186518 AGTCCTAAGTTCATAAGCCCTTTATTCGCATTGTAACGA 186480 >seq4 Length=425142 Score = 192 bits (212), Expect = 4e-44 Identities = 196/255 (77%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| | ||||| || || ||||| ||||| |||| || ||||| ||||| ||||| Sbjct 260031 ATGATTTGTATAAATGTGTGCATCACCAATTGTATGAACAAATTCTCCCACTTCAAGTCC 259972 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 ||| ||| ||||| | |||||| |||| || ||| |||||||||||||||||||| Sbjct 259971 GCATTCATGTGCAATTAAATGTGTTAGTAGTGAGTAACTTGCAATGTTAAATGGAATTCC 259912 Query 78485 TAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATAC 78544 | ||||| |||||| |||| ||| || || || ||| |||||||||| ||| ||| Sbjct 259911 AAGGAATATGTCACCACTTCTTTGATATAACTGACAAGAAAGCTTTCCAT---CTGCTAC 259855 Query 78545 GTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATT 78604 |||||||||||||| || ||||||||||||| |||||| || || | ||||| Sbjct 259854 ATAAAACTGGAATAGCGTATGACAAGGCGGTAAGGCCATACTTGGTACATCTTCTGGATT 259795 Query 78605 CCAAGCAGACACAAT 78619 ||||||||| || || Sbjct 259794 CCAAGCAGAAACGAT 259780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300140081101000