Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq2 196 7e-45 seq9 161 1e-34 >seq2 Length=633208 Score = 196 bits (216), Expect = 7e-45 Identities = 391/574 (68%), Gaps = 14/574 (2%) Strand=Plus/Plus Query 173169 ATGGGTGGAGGTGTATCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCTATTAAA 173228 || || || || ||| | || ||| ||||||| |||| ||||| ||||| |||||| Sbjct 184102 ATCGGCGGGGGAGTAGCTTTAAACTTATCTAAGCTACGCGCACGCGGTGAGCAAATTAAA 184161 Query 173229 GGAATCGACGGAAGAGCTTCAGGTG---TTTTACCAGTAATGAAAATCCTTGAAGATGCT 173285 || |||||| | ||| || ||| | |||| || |||||| | ||||||||| | Sbjct 184162 GGTATCGAC---AACGCTGCAAGTGGCGTAGTACCTGTTATGAAATTGCTTGAAGATTCG 184218 Query 173286 TTTTCATATGCTAATCAATTAGGACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATC 173345 ||||||||||| ||||| | || ||||| |||||| || || | ||| | || || Sbjct 184219 TTTTCATATGCGAATCAGCTTGGCCAACGAAAAGGTGCCGGTGCAGTATATTTAAACATT 184278 Query 173346 TTCCATTCAGATGTTGAAGAATTTCTAGATTCTAAGAAAATCAACGCTGACGAAAAATCA 173405 ||||||| ||| || ||||| || ||| | || ||||| || || || || || Sbjct 184279 TTCCATTGGGATATTATTGAATTCCTTGATACAAAAAAAATAAATGCCGATGAGAAGAGC 184338 Query 173406 CGTCTTAAATCGCTTTCGTTAGGTGTTATCGTTCCTGACAAATTCATGGAATTAGCTGAG 173465 ||| || | || || || | || |||||||||| || ||| | || | |||||| Sbjct 184339 CGTATTCAGTCTCTATCAATCGGAATTATCGTTCCAAGTAAGTTCTTTGAGCTTGCTGAG 184398 Query 173466 AAGGATGAACCATTTTATGTTTTCTATCCATATACAGTTAAGAAAGAATACGGTAAACAT 173525 || | ||||| || |||||||| || ||||| ||| | |||||||| || || ||| Sbjct 184399 AAAAACGAACCTTTCCATGTTTTCGCGCCTTATACGGTTTATAAAGAATATGGCAAGCAT 184458 Query 173526 CTAGATGATTTGGATATCGATACAATGTATTCCGAATTAGTTTCTAATCCTAATGTTAAG 173585 |||||||| | || || ||| |||||| |||||| | ||||| || || ||| Sbjct 184459 TTAGATGATATTGACATTGATGAAATGTACGATGAATTAATGAGCAATCCGAAAGTGAAG 184518 Query 173586 AA-ACGTAAGTTAAATGCTAG---ACG---TATGTTAACTAAGATTGCACAAGTTCAGAA 173638 || | | | || || ||| ||| |||| | | ||| || || ||||| Sbjct 184519 AAGAAGCCA-CTAGATATTAGTGCACGTGATATGCTTATTAAAATCGCTATGATTCAGCT 184577 Query 173639 AGAATCAGGTTATCCATATTTCTTCTTGAAAACTAATGCTAACGAATATCATCCTTTGAA 173698 || || ||||| ||||| || | || ||| | ||||| || | | ||||| ||||| Sbjct 184578 TGAGTCTGGTTACCCATACTTAATGTTTAAATCAAATGCAAATAATCAACATCCATTGAA 184637 Query 173699 GAATTTGGGAGACGTTAAGTTTTCTAATTTATGT 173732 | || | ||| || ||| | || || |||||| Sbjct 184638 GGATATTGGAACTGTGAAGATGTCGAACTTATGT 184671 >seq9 Length=252781 Score = 161 bits (178), Expect = 1e-34 Identities = 403/607 (66%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 139439 AAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTGTT 139498 ||||| |||||| | || || || ||| || ||||| | || || || || Sbjct 241367 AAAGGGATTATTCTTGCTGGAGGTAGTGGAACTCGCTTATACCCTTTAACCCAAGCGGTA 241426 Query 139499 TCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTT 139558 || || || |||||||||||||| |||||||||||||| |||||||| | || | Sbjct 241427 TCTAAGCAATTATTACCTGTATATGATAAACCAATGATCTACTATCCGCTATCAGTGTTA 241486 Query 139559 ATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATAGAAATTCTTTC 139618 || || ||||| |||||| | || || || ||||||||||||| | | ||| Sbjct 241487 ATGCTTGCGGGTATTCGCGAAATTTTGATTATCTCTACACCACAGGATACACCTCGTTTT 241546 Query 139619 GAGAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAAGAA 139678 | | ||| |||| | |||||||| || || | | | | ||||| ||||| ||| Sbjct 241547 AAAGAGTTATTAGGAGATGGTTCACAGTTCGGGATAAAACTTGAATATGCTGTGCAACCT 241606 Query 139679 AAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGG---TAAATCT 139735 ||| | |||||||| || || || ||||||| ||||| || || || | | ||| Sbjct 241607 TCACCGGACGGTTTAGCTCAGGCATTTATTATCGGAGAAGAGTTTATTGGAGATGATTCT 241666 Query 139736 AAAGTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAATATA--GATAG-ATTA 139792 |||||||| || | ||||| || | ||| ||| | || || | |||| Sbjct 241667 ---GTAGCTCTTGTTCTTGGTGATAATTTATTCTATGGACACGGTTTAACGAAACTATTA 241723 Query 139793 CTTATGGAAGCTAATATGTCTGATAAAAAT-----ACGATATTTGCATATCGTGTAAATG 139847 | | | || | | | | || || || | |||| |||| |||||||| Sbjct 241724 CAAAACGCCGCAGA-ACGCC----AAGAAGGGGCAACTGTCTTTGGATATTATGTAAATG 241778 Query 139848 ATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTGTTTCGATCGAAG 139907 |||| | | | ||| || || || || |||||| || || ||| |||| || |||| Sbjct 241779 ATCCAGAACGTTTTGGGGTTGTAGAGTTTGATGAAGGTGGGAAGGCTATTTCTATTGAAG 241838 Query 139908 AAAAACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATAATAACG 139967 | || ||| | || || || |||| || ||| |||| |||||||||||| |||| Sbjct 241839 AGAAGCCTCAAGAGCCAAAGTCACATTATGCTGTAACAGGTTTATATTTCTATGATAATC 241898 Query 139968 ATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGAAATATCAG 140027 |||||| || | || |||| ||| ||||| ||| |||||||||||| || || | | Sbjct 241899 GTGTTATAGAGATTGCGAAGAATATTAAACCATCACCTCGTGGAGAATTGGAGATTACTG 241958 Query 140028 ATATTAA 140034 |||| || Sbjct 241959 ATATAAA 241965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701814629490400