Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq9 237 1e-57 >seq9 Length=252781 Score = 237 bits (262), Expect = 1e-57 Identities = 541/796 (68%), Gaps = 25/796 (3%) Strand=Plus/Minus Query 38624 CCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATA 38683 |||||| | || || ||||| || || || || | ||| || | ||||| || ||||| Sbjct 242139 CCTTTTCTAAATGCTATTTCCTCTAAACAAGCTACCTTTAAACTTTGACGTTTTTCAATT 242080 Query 38684 GTCTGCACGAATTGACCAGCTTCCATCA--GACTGGCGTGTGTTCCTGTGTCAAGCCAAG 38741 || | | |||||| ||||| | | |||| |||| || || | ||| | ||||| Sbjct 242079 GTTTCAATAAATTGAGATGCTTCTAATAATGACT--CGTGCGTGCCAGAGTCTAACCAAG 242022 Query 38742 TAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTC-TTCTAGGTAGCTGCGATTG 38800 ||| ||||| || |||| ||| || || |||| | ||| || || || ||| Sbjct 242021 AAAAGCCTCGGCCAAGAATTTCAACGTGCAACT-CTTGTAATTGTAAATAAACCTTATTT 241963 Query 38801 ATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTAC-TTCTAATGCACGTTGAAT 38859 |||||||| ||||||| ||||||||| | || || | | |||| ||| | || Sbjct 241962 ATATCAGTAATCTCCAATTCTCCACGAGGTGATGGTTTAATATTCTTC-GCAATCTCTAT 241904 Query 38860 AACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGG 38919 |||| |||||||||||||| |||||||| |||||||||| ||| || || | || ||| Sbjct 241903 AACACGATTATCATAGAAATATAAACCTGTTACAGCATAATGTGACTTTGGCTCTTGAGG 241844 Query 38920 TTTCTCTTCAATAGAAATAGCTTGACGA--TTACTCCCAAATTCAACCACACCGAATCGT 38977 |||||||||||||||||||| | | | || | |||| || || || || || ||| Sbjct 241843 CTTCTCTTCAATAGAAATAGCCTTCCCACCTTCAT--CAAACTCTACAACCCCAAAACGT 241786 Query 38978 TCAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTCA 39037 || ||||| || || |||| || ||| || || | |||| | ||| || Sbjct 241785 TCTGGATCATTTACATAATATCC--AAAGAC-AGTT--GCCC----CTTCTTGGCGTTCT 241735 Query 39038 CTGGCGTTAATCAGTAGTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAATA 39097 |||||| | |||||| || | ||||| |||||| || ||||| | || | Sbjct 241734 GCGGCGTTTTGTAATAGTTTCGTTAAACCGTGTCCATAGAATAAATTATCACCAAGAACA 241675 Query 39098 AGAGCAACAGAGTCTTCTCCGATAAAATCTTTACCTATGATGAAAGCTTCCGCAAGACCT 39157 ||||| ||||| || ||||| ||||| |||| || || || || || | || | ||| Sbjct 241674 AGAGCTACAGAATCATCTCCAATAAACTCTTCTCCGATAATAAATGCCTGAGCTAAACCG 241615 Query 39158 CGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACATAGACCCATCTCCGAGA 39217 || | ||| | || || ||||||||||| ||| || |||||||| | | Sbjct 241614 TCCGGTGAAGGTTGCACAGCATATTCAAGTTTTATCCCGAACTGTGAACCATCTCCTA-A 241556 Query 39218 AGATACTCAAAGTCTTCCTG-ATCACCTGGTGTGGTGATGATTAAAATATCCTTAATGTC 39276 | || || | || ||| |||||| | ||| || ||||| || ||| | Sbjct 241555 TAACTCTTTAAAACGAGGTGTATCCTGTGGTGTAGAGATAATCAAAATTTCGCGAATACC 241496 Query 39277 AGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGCAA 39336 || | ||| || || |||| || ||||||||||| ||||| ||||| ||||| | || Sbjct 241495 CGCAAGCATTAACACTGATAGCGGATAGTAGATCATTGGTTTATCATATACAGGTAATAA 241436 Query 39337 TTGCTT-GCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCCCGCCAAAA 39395 |||||| | | | || | |||| || | | ||| |||||||| ||||| || | || Sbjct 241435 TTGCTTAGATACCGCT-TGGGTTAAAGGGTATAAGCGAGTTCCACTACCTCCAGCAAGAA 241377 Query 39396 TAATACCTTTCATAAC 39411 |||| ||||||||||| Sbjct 241376 TAATCCCTTTCATAAC 241361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472598231593400