Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq16 93.3 5e-14 seq325 89.7 6e-13 seq69 89.7 6e-13 seq1 87.8 2e-12 seq3539 84.2 2e-11 seq4130 82.4 9e-11 seq3015 82.4 9e-11 >seq16 Length=199848 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||| |||||||||||||| ||||| |||| ||||||| |||| |||||||||||| | Sbjct 271 ATTCCGCAGTAGCTCAGCGGTAGAGCTATCGGCTGTTAACCGATCGGTCGTAGGTTCGAT 330 Query 18187 TCCTACCTGGGGAG 18200 ||||||||| |||| Sbjct 331 TCCTACCTGCGGAG 344 >seq325 Length=23210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||| ||||||||||| || ||||| |||| ||||||| |||| |||||||||||| | Sbjct 22452 ATTCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGTCGTAGGTTCGAG 22393 Query 18187 TCCTACCTGGGGAG 18200 ||||||||| |||| Sbjct 22392 TCCTACCTGCGGAG 22379 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 23208 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 23149 Query 18069 CCGCTATTCTCCA 18081 |||||| ||||| Sbjct 23148 CCGCTAGGCTCCA 23136 >seq69 Length=88854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||| ||||||||||| || ||||| |||| ||||||| |||| |||||||||||| | Sbjct 1290 ATTCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGTCGTAGGTTCGAG 1231 Query 18187 TCCTACCTGGGGAG 18200 ||||||||| |||| Sbjct 1230 TCCTACCTGCGGAG 1217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 ||||| ||||||||||| || ||||| |||| ||||||| |||| |||||||||||| | Sbjct 88601 ATTCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGTCGTAGGTTCGAG 88542 Query 18187 TCCTACCTGGGGAG 18200 ||||||||| |||| Sbjct 88541 TCCTACCTGCGGAG 88528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 87858 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 87799 Query 18069 CCGCTATTCTCCAT 18082 |||||| |||||| Sbjct 87798 CCGCTAGGCTCCAT 87785 >seq1 Length=1156483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||| ||||||||||| || ||||| |||| ||||||| |||| |||||||||||| | | Sbjct 1155499 TTCCGCAGTAGCTCAGTGGTAGAGCTATCGGCTGTTAACCGATCGGTCGTAGGTTCGAGT 1155440 Query 18188 CCTACCTGGGGAG 18200 |||||||| |||| Sbjct 1155439 CCTACCTGCGGAG 1155427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 1156481 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 1156422 Query 18069 CCGCTATTCTCCA 18081 |||||| ||||| Sbjct 1156421 CCGCTAGGCTCCA 1156409 >seq3539 Length=324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 6/111 (5%) Strand=Plus/Minus Query 17977 GGTCGCAAGTTCAAATCTTGTCA----GGGGCTC--TCGGGGAATTAGCTCAGTTGGTAG 18030 ||||||| ||||||||| |||| | || | |||| ||||||||| ||| || Sbjct 193 GGTCGCAGGTTCAAATCCTGTCTTCCCGATACTTGTTTGGGGCCTTAGCTCAGCTGGGAG 134 Query 18031 AGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCGCTATTCTCCA 18081 ||||||||| ||||| |||||| ||||||||||||| |||||| ||||| Sbjct 133 AGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCA 83 >seq4130 Length=254 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 76 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 17 Query 18069 CCGCTATTCTCCA 18081 |||||| ||||| Sbjct 16 CCGCTAGGCTCCA 4 >seq3015 Length=428 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 150 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 91 Query 18069 CCGCTATTCTCCA 18081 |||||| ||||| Sbjct 90 CCGCTAGGCTCCA 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561209800058000