Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_020873.1 Length=158621 Score E Sequences producing significant alignments: (Bits) Value seq2232 104 2e-17 seq4 104 2e-17 seq7 96.9 4e-15 seq2763 95.1 1e-14 seq6 89.7 5e-13 seq5 86.0 6e-12 >seq2232 Length=716 Score = 104 bits (114), Expect = 2e-17 Identities = 103/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 157665 TGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAACC 157724 ||||||||||| |||| | |||||| | |||||||| ||||||| |||| ||||| ||| Sbjct 276 TGGTGCCGACTAGAGGACTTGAACCCCCAACCTACTGATTACAAGTCAGTTGCTCT-ACC 334 Query 157725 AACTGAGCTAAGAAGGCAAATTGGAGGGACATGTCGGAATCGAACCGAC-CTCCCCTGGT 157783 || ||||||||| ||| || ||| || ||| ||| ||||||||| | |||||| | Sbjct 335 AATTGAGCTAAGTCGGCTAAATGGTGGAGGATGACGGGATCGAACCGCCGACCCCCTGCT 394 Query 157784 TGGAAGCCAGG 157794 || ||| |||| Sbjct 395 TGTAAGGCAGG 405 >seq4 Length=425142 Score = 104 bits (114), Expect = 2e-17 Identities = 282/421 (67%), Gaps = 37/421 (9%) Strand=Plus/Plus Query 12585 TTAGGTGATATCTACGGAGCACAGTGGCGTAACTGGAA---------TGGTGAGAACATT 12635 ||||| || | ||||| |||||||||| ||||| |||||||| || Sbjct 259663 TTAGGAGACGTTTACGGTAAACAGTGGCGTGCTTGGAAAACGACAGCTGGTGAGACACTT 259722 Query 12636 GACCAGTTGAAAGACTTAATTGAACAGGTTAAAACAAACCCTGATTCAAGACGTATGTTA 12695 || || || ||||| |||||||| | |||||| || || || ||| | ||| ||| Sbjct 259723 GATCAATTAAAAGATGTAATTGAAATGATTAAAAAAACACCAGACTCACGTCGT---TTA 259779 Query 12696 ATGATTGC-GTTT--AATCCATC---TGTACTCGGTAAGGTAGCATTACCACCATGTCAT 12749 || || | | || |||||| ||||| ||| || | ||||| || |||||| Sbjct 259780 ATCGTTTCTGCTTGGAATCCAGAAGATGTACCAAGTATGG---CCTTACCGCCTTGTCAT 259836 Query 12750 TATGCAGTTC-AGTTATATGTGGCAGAAGGTAAGTTAAGCTTAATGT---TTA---CAAT 12802 | || ||| |||| ||||| ||||| || ||| | || ||| ||| ||| Sbjct 259837 -ACGCTATTCCAGTTTTATGTAGCAGATGGAAAGCT----TTCTTGTCAGTTATATCAA- 259890 Query 12803 GAGAAGTAATGATATTTTCTTAGGTTTACCCTTTAACATCGCTAGTTATGCACTATTGGT 12862 |||||| ||| || ||| | || | || |||||||| || ||||| ||||| | Sbjct 259891 -AGAAGTGGTGACATATTCCTTGGAATTCCATTTAACATTGCAAGTTACTCACTACTAAC 259949 Query 12863 ACACATCATTGCAAA-GATGACGGGACTTGAAGTGGGAGAACTTGTTTACTCGGCAGGTG 12921 ||| | |||||| | || ||| |||||||||||||||| ||||| | | |||| Sbjct 259950 ACATTTAATTGCACATGAATGCGG-ACTTGAAGTGGGAGAATTTGTTCATACAATTGGTG 260008 Query 12922 ACGCACATGTGTATCTAAACCATATCGAACAGGTTAAAGAGCAGTTACAACGTGAGCCAC 12981 | ||||| | ||| ||| ||| | ||||| || || |||| || |||||| |||| Sbjct 260009 ATGCACACATTTATACAAATCATTTTGAACAAGTAGAAAAGCAATTGGCACGTGAACCAC 260068 Query 12982 G 12982 | Sbjct 260069 G 260069 >seq7 Length=350003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/232 (69%), Gaps = 13/232 (6%) Strand=Plus/Minus Query 139198 ACGTCAATACGATTACCCTTGATAGCGCCACCTGTATCTAGCGCAGTCGCTTCTCCATAT 139257 || |||||||||||||| || || || | || ||||| || ||||||||||||| Sbjct 229215 ACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCCATAG 229156 Query 139258 CCTTCGACATGAACTTTCGTTCCTAATGGAATTACTCGTGGGTCTACTGCGATGATTCGA 139317 ||||| || ||||| | ||||||||| |||||| ||||| |||||||| |||| Sbjct 229155 CCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAATTCTC 229096 Query 139318 GCGTTAGGGTTCTTACTCAAGTTGAATCCTG-----TAGCCGTTAATACTTGTCCACCGT 139372 || || || | ||| |||| || | || ||||| || ||||||| | Sbjct 229095 ATATTCGGATT-----TGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCACCAT 229041 Query 139373 ATGTACCACCGTTCTCACTTGGGTGTGGTGTATATGCAGTTGCTTCCACTGT 139424 |||||||| || |||||||| | | ||||| || || ||| | || || Sbjct 229040 ATGTACCA---TTTTCACTTGGATCAGCAGTATACGCTGTCGCTACTACCGT 228992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 5965 GGGGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTTTCTAAACAACTG 6024 || |||||||||| || || || || ||| | | || |||||| | || ||||| Sbjct 347814 GGTGTTGAGGTTTTGTATTATGATCAGAAAGATTTGGCGGCTAAAATCTCAGCTCAACTA 347873 Query 6025 TCTGATGACATTGGCTGGTCTAACCGTGGAGCTAAAGTACGTACAGACCTTTAC--GTGT 6082 | | || ||||| ||| | | || || || ||| ||||| || |||| || | Sbjct 347874 GCAAAAGATATTGGATGGCGTGATCGAGGTGCGAAACAGCGTACGGA--TTTAGCGGTAT 347931 Query 6083 TAAACACTACTAGCGCACCTGCTATCTTAATCGAATTAGGATTCATCGACAACGAGAGCG 6142 |||| || | ||||||||||| | || ||||||||||| || ||||| || | Sbjct 347932 TAAATGGGACGAAAGCACCTGCTATTCTTATAGAATTAGGATTTATTGACAATGAATCTG 347991 Query 6143 ACATGGCTAAGTGGAACGTAGATAAAATCGCAGATTCT 6180 | ||||| || ||||| || ||||||||||| ||||| Sbjct 347992 ATATGGCAAAATGGAATGTTGATAAAATCGCTAATTCT 348029 >seq2763 Length=485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 157665 TGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAACC 157724 ||||||||||| |||| | |||||| | |||||||| ||||||| |||| ||||| ||| Sbjct 397 TGGTGCCGACTAGAGGACTTGAACCCCCAACCTACTGATTACAAGTCAGTTGCTCT-ACC 339 Query 157725 AACTGAGCTAAGAAGGCAAATTGGAGGGACATGTCGGAATCGAACCG 157771 || ||||||||| ||| || ||| || ||| ||| ||||||||| Sbjct 338 AATTGAGCTAAGTCGGCTAAATGGTGGAGGATGACGGGATCGAACCG 292 >seq6 Length=382643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 139142 TAACTTTCACTTGTTTTCGACCCCACGCATTTGCTTGTGAGTCGGTTGGTAATAGTACGT 139201 ||| | |||||| ||| || ||||| || |||||| || || || || || || | Sbjct 157060 TAATTCTCACTTTTTTACGTCCCCATTCACGTGCTTGCTTTTCTGTAGGAAACAGAACAT 157119 Query 139202 CAATACGATTACCCTTGATAGCGCCACCTGTATCTAGCGCAGTCGCTTCTCCATATCCTT 139261 |||| ||| || || ||||| |||||||||||| ||| | || || || ||||||| Sbjct 157120 CAATTTTATTGCCTTTAATAGCCCCACCTGTATCTCCAGCAATTGCATCACCGTATCCTT 157179 Query 139262 CGACATGAACTTTCGTTCCTAATGGAATTACTCGTGGGTCTACTGCGAT 139310 | || |||||||||||||| | ||| ||| || || ||||| || Sbjct 157180 CAACCCAAACTTTCGTTCCTAGTTTAATAACTTTAGGATCAACTGCAAT 157228 >seq5 Length=406804 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 154359 TGTTCTGTTCCATGTGTTATAAAACTTGTTCTTACCGTCTAAGTAGAAGACCGCAGAATC 154418 |||| ||||||| ||||||||| | || || ||||||||||| || | || |||| | Sbjct 286232 TGTTTTGTTCCAAGTGTTATAATATTTATTTTTACCGTCTAAATAAATAACTTCAGAGTT 286173 Query 154419 AAATGTCGGATCGTCAATAGCGATGTACGGATTTGTTACGGATGCGTTCGTCTCTAATTC 154478 |||| | ||||||||||||| || |||| | | ||||||||| |||||| ||| Sbjct 286172 AAATTTAGGATCGTCAATAGTTATATACGCTCCTTCAATGGATGCGTTTTTCTCTAGTTC 286113 Query 154479 TA 154480 || Sbjct 286112 TA 286111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507424661058200