Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 1e-14 seq1 91.5 2e-13 seq325 89.7 6e-13 seq69 89.7 6e-13 >seq16 Length=199848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||| | |||||||||||| |||| ||||||| |||||||||| |||||| Sbjct 344 CTCCGCAGGTAGGAATCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCGCTG 285 Query 35571 AGCTACTGAGGA 35582 |||||||| ||| Sbjct 284 AGCTACTGCGGA 273 >seq1 Length=1156483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 35505 ATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTG 35564 |||| |||| ||||||||| | |||||||||||| |||| ||||||| |||||||||| Sbjct 1155421 ATATGGCTCCGCAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTA 1155480 Query 35565 CCGCTGAGCTACTGAGGA 35582 || ||||||||||| ||| Sbjct 1155481 CCACTGAGCTACTGCGGA 1155498 >seq325 Length=23210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||| | |||||||||||| |||| ||||||| |||||||||| || ||| Sbjct 22379 CTCCGCAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTG 22438 Query 35571 AGCTACTGAGGA 35582 |||||||| ||| Sbjct 22439 AGCTACTGCGGA 22450 >seq69 Length=88854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||| | |||||||||||| |||| ||||||| |||||||||| || ||| Sbjct 1217 CTCCGCAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTG 1276 Query 35571 AGCTACTGAGGA 35582 |||||||| ||| Sbjct 1277 AGCTACTGCGGA 1288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||| | |||||||||||| |||| ||||||| |||||||||| || ||| Sbjct 88528 CTCCGCAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTG 88587 Query 35571 AGCTACTGAGGA 35582 |||||||| ||| Sbjct 88588 AGCTACTGCGGA 88599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572015464547400